|   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | A | I | L | K | A | V | A | I | P | G | Y | Q | V | P | F | G | G | R | E | M | P | M | P | Y | G | W | G | T | G | G | I | Q | L | T | A | S | V | I | G | E | S | D | V | L | K | V | I | D | Q | G | A | D | D | T | T | N | A | V | S | I | R | N | F | F | K | R | V | T | G | V | N | T | T | E | R | T | D | D | A |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |
|   |   |
|   |   |
|
|   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|
|   |
|
|   |
|   |   |
|   |   |   |   |   |   | . |   |   |   |
|   |   |
|   |   |
|
|
|
|
|
|   |
|   |
|
|   |
| . | . | . | . | . |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |
|
Template Sequence |   |
R | R | L | L | K | A | X | S | E | P | G | V | I | V | A | L | H | Q | L | K | R | G | . |
W | Q | P | L | N | I | A | T | T | S | V | L | L | T | L | A | D | N | D | T | P | V | . |
. |
. |
. |
. |
W | L | S | T | P | L | N | N | D | I | V | N | Q | S | L | R | F | H | T | N | A | P | L | V | S | Q | P | E | Q | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | S | T | T |
|
|  |  |
|
| S | S | S | S |
| . | S | T | T | S |
|  |  |  |  |  |  |  |  |  |  |
|
| T | T | S |
|  | . | . | . | . | . |  |  |
| G | G | G |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| B |
| S | S | G | G | G |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
| . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
|
120 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
| . | . |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
Query Sequence |   |
T | V | I | Q | T | R | H | R | I | P | E | T | P | L | T | E | D | Q | . |
. |
I | I | I | F | Q | V | P |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |
|
| . | . |
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|
|
|
|
|
|   |
|   |
Template Sequence |   |
T | F | A | V | T | D | E | A | I | S | S | E | Q | L | N | A | L | S | G | A | T | L | I | L | Q | V | A |
Template Known Secondary structure |   |
S |  |  |  |  |
| T | T |
|
|  |  |  |  |  |  | T |
|
|
|  |  |  |  |  |
| S |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
  |