 |
Job Description | P16688 | Confidence | 10.55% | Date | Wed Jan 25 15:20:39 GMT 2012 |
Rank | 68 | Aligned Residues | 58 |
% Identity | 22% | Template | c1m57H_ |
PDB info |
PDB header:oxidoreductase | Chain: H: PDB Molecule:cytochrome c oxidase; |
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
|
Resolution | 3.00 Å |
|
 |
  |   |
212 | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | |
. | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  | . |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | I | Y | A | V | P | P | F | T | R | V | E | S | L | D | F | D | D | H | P | F | T | V | Q | Q | W | D | E | P | C | A | . |
I | C | G | S | T | H | S | Y | L | D | E | V | V | L | D | D | A | G | N | R | M | F | V | C | S | D | T | D | Y | C | R | Q | Q | S | E | A | K | N | Q |
Query Conservation |   |
|
|
|
|
|
|
|   |
|   |
|   |
|
|   |
|   |
|   |
|
|   |
|
|   |   |   |   |
|
|   | . |   |
|
|
|   |   |   |
|
|
|
|
|   |   |
|
|   |
|   |   |   |   |   |
|
|
|   |
|   |
|   |   |
|   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|   |   |
|   |   |   |   | . | . | . | . |   |   |   |   |   |
|   |
|   |
|   |
|
|
|
|
|
|   |   |
|
|   |
|   |   | . | . | . | . | . | . | . | . |   |
|   |
|
|   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |
Template Sequence |   |
K | Q | D | A | V | P | G | R | L | A | Q | L | W | F | . |
. |
. |
. |
R | A | E | R | E | G | I | F | F | G | Q | C | S | E | L | C | G | I | S | H | A | Y | M | P | I | . |
. |
. |
. |
. |
. |
. |
. |
T | V | K | V | V | S | E | E | A | Y | A | A | W | L | E | Q | A | R | G | G |
Template Known Secondary structure |   |
 |  |  |  |
| T | T |
|
|  |  |  |  |  | . | . | . | . |  |
| S | S |
|  |  |  |  |  |
|
|
| S |
|
| S | G | G | G | G | S |
|
|  | . | . | . | . | . | . | . | . |  |  |  |  | B |
|  |  |  |  |  |  |  |  |  |  | T | T | T | T |
Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|  |  |  |  |  |  | . | . | . | . |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
227 | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | |
|
|
|
. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|