Job Description P37197 Confidence 98.95% Date Thu Jan 5 11:55:03 GMT 2012 Rank 18 Aligned Residues 205 % Identity 21% Template c3mk7F_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase Resolution 3.20 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	A	K	Q	R	A	E	Y	Y	A	S	N	D	T	A	P	E	H	R	N	E	P	V	Q	P	I	P	Q	K	L	P	T	D	A	Q	K	V	A	L	G	F	A	L	Y	H	D	P	R	L	S	A	D	S	T	I	S	C	A	H	C	H	A	L	N	A	G	G	V	D	G	R	K	T	S	I	G	V	G	G
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	K	Q	W	E	R	E	V	A	Q	A	D	E	K	Y	G	P	I	F	A	K	Y	A	A	M	S	V	E	E	V	A	Q	D	P	Q	A	V	K	M	G	A	R	L	F	.	.	.	.	.	.	.	.	.	A	N	Y	C	S	I	C	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	D	A
Template Known Secondary structure																										T	S							T													.	.	.	.	.	.	.	.	.				T					.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.										140	.	.	.	.	.	.	.															.	.	150	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	P	I	N	A	P	T	V	F	N	S	V	F	N	V	E	Q	F	W	D	G	R	A	A	T	L	Q	D	Q	A	G	G	P	P	L	N	P	I	E	M	A	S	K	S	W	D	E	I	I	A	K	L	E	K	D	P	Q	L	K	T	Q	F	L	E	V	Y	P	Q	G	F	S	G	E	N	I	T	D	A
Query Conservation
Alig confidence							.										.	.	.	.															.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.										.	.	.	.															.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	S	L	G	.	F	P	N	L	A	D	Q	D	W	.	.	.	.	R	W	G	G	D	A	A	S	I	K	T	S	I	L	.	.	.	.	N	G	R	I	A	A	M	P	A	W	G	Q	A	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	G	V	K	N
Template Known Secondary structure				B	T	T	.	B			S	S	S	S			.	.	.	.	S	S			S										.	.	.	.							B									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.										.	.	.	.															.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.		.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.																							.	.	.	.	.	200
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	F	E	K	T	L	I	T	P	D	S	P	F	D	K	W	L	R	G	D	E	N	A	L	T	A	Q	Q	K	K	G	Y	Q	L	F	K	D	N	K	C	A	T	C	H	G	G	I	I	L	G	G	R	S	F	E	P	L	G	L	K	K	D	F	N	F	G	E	I	T	A	A	D	I	G	R	M	N	V
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.																		.							.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.																		.							.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	A	F	V	R	K	D	L	A	G	L	P	L	.	.	.	.	.	.	.	.	P	E	G	T	D	A	D	L	S	A	G	K	N	V	Y	A	Q	.	T	C	A	V	C	H	.	.	.	G	Q	G	G	E	G	M	A	A	L	G	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	T					.	.	.	.	.	.	.	.		S	S															.	T	T					.	.	.		T	T	S			B	T	T	T	T	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																		.							.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.									.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		T	K	E	E	R	D	K	L	R	Q	K	V	P	G	L	R	N	V	A	L	T	A	P	Y	F	H	R	G	D	V	P	T	L	D	G	A	V	K	L	M	L	.	.	.	R	Y	Q	V	G	K	E	L	P	Q	E	D	V	D	D	I	V	A	F	L	H	S	L	N
Query Conservation																																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	N	S	A	A	G	W	I	Y	G	S	S	L	G	Q	L	Q	Q	T	I	R	H	G	R	N	G	Q	M	P	A	Q	Q	Q	Y	L	G	D	D	K	V	H	L	L	A	A	Y	V	Y	S	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		G	G	G		S	S			S												B								T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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