Job Description P37197 Confidence 98.28% Date Thu Jan 5 11:55:03 GMT 2012 Rank 42 Aligned Residues 187 % Identity 19% Template c1m70D_ PDB info PDB header:electron transport Chain: D: PDB Molecule:cytochrome c4; PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri Resolution 1.25 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	L	G	F	A	L	Y	H	D	P	R	L	S	A	D	S	T	I	S	C	A	H	C	H	A	L	N	A	G	G	V	D	G	R	K	T	S	I	G	V	G	G	A	V	G	P	I	N	A	P	T	V	F	N	S	V	F	N	V	E	Q	F	W	D	G	R	A	A	T	L	Q	D	Q	A	G	G	P	P	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Sequence		A	E	A	G	Q	G	K	V	A	.	.	.	.	.	.	.	.	.	.	V	C	G	A	C	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	G	N	S	P	A	P	N	F	P	K	L	A	G	Q	G	E	R	Y	L	L	K	Q	.	.	.	.	.	.	L	Q	D	I	K	A	G	S	T	P
Template Known Secondary structure							T	T			.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S			S	S	T	T	S				T	T										.	.	.	.	.	.									S	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.											.	.	.	.	.	.															.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	I	E	M	A	S	K	S	W	D	E	I	I	A	K	L	E	K	D	P	Q	L	K	T	Q	F	L	E	V	Y	P	Q	G	F	S	G	E	N	I	T	D	A	I	A	E	F	E	K	T	L	I	T	P	D	S	P	F	D	K	W	L	R	G	D	E	N	A	L	T	A	Q	Q	K	K	G	Y	Q	L	F
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Sequence		G	A	P	E	G	V	G	R	K	V	L	E	M	T	G	M	L	D	P	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	D	L	E	D	I	A	A	Y	F	S	S	Q	K	G	S	V	G	Y	.	.	.	.	.	.	A	D	P	A	L	A	K	Q	G	E	K	L	F	R	G	G	K
Template Known Secondary structure		T			T	T	S	S				G	G	G	T	T	T	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S							.	.	.	.	.	.																	B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.																	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.							.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	N	K	C	A	T	C	H	G	G	I	I	L	G	G	R	S	F	E	P	L	G	L	K	K	D	F	N	F	G	E	I	T	A	A	D	I	G	R	M	N	V	T	K	E	E	R	D	K	L	R	Q	K	V	P	G	L	R	N	V	A	L	T	A	P	Y	F	H	R	G	D	V	P	T	L	D	G	A	V
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Sequence		L	D	Q	G	M	P	A	C	T	G	C	H	A	P	N	G	V	G	N	D	L	A	G	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	G	G	Q	H	A	A	Y	T	A	K	Q	L	T	D	F	R	E	G	N	R	T	N	D	G	D	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	G	T	B			S						T	T	S			B	G	G	G	T	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T																T	S			T	T		T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	M	L	R	Y	Q	V	G	K	E	L	P	Q	E	D	V	D	D	I	V	A	F	L	H	S	L	N
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	T	M	I	M	R	G	V	A	A	K	L	S	N	K	D	I	E	A	L	S	S	Y	I	Q	G	L	H
Template Known Secondary structure		.	T								T	T
Template Predicted Secondary structure		.
Template SS confidence
			164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions