Return to main results Retrieve Phyre Job Id

Job DescriptionP39308
Confidence25.99%DateThu Jan 5 11:59:11 GMT 2012
Rank3Aligned Residues95
% Identity22%Templated2q9oa2
SCOP infoCupredoxin-like Cupredoxins Multidomain cupredoxins
Resolution1.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   52.......60.. .......70.........80.........90.........100.........110.........120...
Predicted Secondary structure 



.......












.
Query SS confidence 










. . . . . . .




























































.
Query Sequence  VEIHKLDLSDW. . . . . . . QAFNKLATRCNAYDGITMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLLQDVE.
Query Conservation 


 




 
.......
 

     
   



  
         
 

 
      

 
   
   

  
    .
Alig confidence 










.......



































............












.
Template Conservation   
  

 
 

 
               
  
  



 
              ............
  
  






 
Template Sequence  IDLGVFPITDYYYRAADDLVHFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVT. . . . . . . . . . . . LTPGKRHRLRILNT
Template Known Secondary structure 
SS
TTS



BSTTB
B
TTT

B


............
TT

Template Predicted Secondary structure 


























............




Template SS confidence 















































































   165....170.........180.........190.........200.........210........ .220.........230..
 
   124.. ...130.........140.........150.........160......
Predicted Secondary structure  ........


............
























Query SS confidence  . . . . . . . .


. . . . . . . . . . . .







































Query Sequence  . . . . . . . . SFE. . . . . . . . . . . . PNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCW
Query Conservation  ........ 
 ............
   





 



   
 
 
 




 



     
Alig confidence  ........


............














........
















Template Conservation           

 
   


 

  
 
     
 
  
........






 
    
 
 
Template Sequence  STENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVG. . . . . . . . QRYDVVIDASRAPDNYW
Template Known Secondary structure 
SS

TTB
TTS

TT........


S
SS
Template Predicted Secondary structure 












........






Template SS confidence 






























































   233......240.........250.........260.........270 .........280.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions