Job Description P39308 Confidence 4.91% Date Thu Jan 5 11:59:11 GMT 2012 Rank 72 Aligned Residues 62 % Identity 23% Template c3eg9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	I	G	Y	V	V	T	L	P	A	Q	M	P	N	C	W	S	S	E	L	P	T	I	D	L	Y	I	D	Q	L	R	T	V	T	G	V	S	N	A	L	G	F	I	I	A	A	L	L	N	A	Y	S	D	L	P	H	D	L	K	I	G	L	R	S	L	S	S	S	A	A	I	Y
Query Conservation
Alig confidence																.	.	.	.	.	.	.									.	.	.	.
Template Conservation																.	.	.	.	.	.	.									.	.	.	.
Template Sequence		S	S	I	E	Y	V	V	L	R	G	P	Q	M	P	.	.	.	.	.	.	.	L	I	F	L	Y	V	V	D	.	.	.	.	T	C	M	E	D	E	D	L	Q	A	L	K	E	S	M	Q	M	S	L	S	L	L	P	P	T	A	L	V	G	L	I	T	F	G	R	M	V	Q	V	H
Template Known Secondary structure		S	S								S					.	.	.	.	.	.	.									.	.	.	.			S																			S		T	T									S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.									.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions