 |
Job Description | P30843 | Confidence | 99.75% | Date | Thu Jan 5 11:46:27 GMT 2012 |
Rank | 110 | Aligned Residues | 99 |
% Identity | 26% | Template | d1ys7a1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| C-terminal effector domain of the bipartite response regulators
| PhoB-like
|
Resolution | 1.58 |
|
 |
  |   |
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | N | Q | G | E | S | E | L | I | V | G | N | L | T | L | N | M | G | R | R | Q | V | W | M | G | G | E | E | L | I | L | T | P | K | E | Y | A | L | L | S | R | L | M | L | K | A | G | S | P | V | H | R | E | I | L | Y | N | D | I | Y | N | W | D | N | E | P | S | T | N | T | L | E | V | H | I | H | N | L | R | D |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
| . |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
Template Sequence |   |
A | T | S | S | S | E | T | I | T | V | G | P | L | E | V | D | I | P | G | R | R | A | R | V | N | G | V | D | V | D | L | T | K | R | E | F | D | L | L | A | V | L | A | E | H | K | T | A | V | L | S | R | A | Q | L | L | E | L | V | W | . |
G | Y | D | F | A | D | T | N | V | V | D | V | F | I | G | Y | L | R | R |
Template Known Secondary structure |   |
|
|
|
|
|
|  |  |  |  | T | T |  |  |  |  | T | T | T | T |  |  |  |  | T | T |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
| B |
|  |  |  |  |  |  |  |  |  | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | |
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
  |
  |   |
200 | . | . | . | . | |
|
. | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
| . | . |
|  |  |  |  |
|
|
|
|  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | G | K | A | . |
. |
R | I | R | T | V | R | G | F | G | Y | M | L | V | A | N |
Query Conservation |   |
|
|   |   |   | . | . |   |
|   |
|
|
|
|   |
|
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |
|   |
|
|   |
|   |
|
|   |
|   |   |   |
Template Sequence |   |
K | L | E | A | G | P | R | L | L | H | T | V | R | G | V | G | F | V | L | R | M | Q |
Template Known Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  | T | T | T |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|