 |
Job Description | P30843 | Confidence | 68.69% | Date | Thu Jan 5 11:46:27 GMT 2012 |
Rank | 221 | Aligned Residues | 28 |
% Identity | 14% | Template | d1or7a1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
Resolution | 2.00 |
|
  |   |
169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | H | R | E | I | L | Y | N | D | I | Y | N | W | D | N | E | P | S | T | N | T | L | E | V | H | I | H | N | L | R | D | K | V |
Query Conservation |   |
  |
|
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|
|   |   |
| . | . | . | . | . |
|   |
|   |   |
|
|   |   |   |
|   |
|
|   |   |   |
|
Template Sequence |   |
L | S | Y | E | E | I | A | A | I | M | . |
. |
. |
. |
. |
D | C | P | V | G | T | V | R | S | R | I | F | R | A | R | E | A | I |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  | T | . | . | . | . | . | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
154 | . | . | . | . | . | 160 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|