Job Description P30843 Confidence 67.72% Date Thu Jan 5 11:46:27 GMT 2012 Rank 222 Aligned Residues 91 % Identity 11% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		2	.	.	.	.	.	.	.				10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																								.	.	.	.	.	.	.																																					.	.	.
Query SS confidence										.	.	.																								.	.	.	.	.	.	.																																					.	.	.
Query Sequence		K	I	L	I	V	E	D	D	.	.	.	T	L	L	L	Q	G	L	I	L	A	A	Q	T	E	G	Y	A	C	D	S	V	T	T	.	.	.	.	.	.	.	A	R	M	A	E	Q	S	L	E	A	G	H	Y	S	L	V	V	L	D	L	G	L	P	D	E	D	G	L	H	F	L	A	R	I	R	Q	.	.	.
Query Conservation										.	.	.																								.	.	.	.	.	.	.																																					.	.	.
Alig confidence										.	.	.																								.	.	.	.	.	.	.																																					.	.	.
Template Conservation
Template Sequence		K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N
Template Known Secondary structure											S	S	S														T										S																T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
			69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	K	Y	T	L	P	V	L	I	L	T	A	R	D	T	L	T	D	K	I	A	G	L	D
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A	C	E	A	Q	A	K	A
Template Known Secondary structure						S								T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions