Job Description P30843 Confidence 97.36% Date Thu Jan 5 11:46:27 GMT 2012 Rank 136 Aligned Residues 55 % Identity 16% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	V	W	M	G	G	E	E	L	I	L	T	P	K	E	Y	A	L	L	S	R	L	M	L	K	A	G	S	P	V	H	R	E	I	L	Y	N	D	I	Y	N	W	D	N	E	P	S	T	N	T	L	E	V	H	I	H	N	L	R	D	K	V	G
Query Conservation
Alig confidence																													.	.	.	.										.	.	.	.	.
Template Conservation																													.	.	.	.										.	.	.	.	.
Template Sequence		R	T	T	P	T	A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	K	.	.	.	.	T	X	E	E	I	A	D	V	E	.	.	.	.	.	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D
Template Known Secondary structure		T				S		B																	T	T	T		.	.	.	.									T	.	.	.	.	.	T																		T
Template Predicted Secondary structure																													.	.	.	.										.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions