Return to main results Retrieve Phyre Job Id

Job DescriptionQ46877
Confidence21.25%DateThu Jan 5 12:35:29 GMT 2012
Rank418Aligned Residues147
% Identity7%Templated3ckma1
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.35

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   231........240.........250.........260.........270.........280.. .......290.........300.........
Predicted Secondary structure 
















.







Query SS confidence 



















































.


























Query Sequence  WRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGIAETDPR. VAVKIFNVARSDKNEILTNVFRSKGVL
Query Conservation   
     

  
  
       

 


 
 



  

  

 

   
  .
 
            
   
   
 

Alig confidence 



























.






















.


























Template Conservation             

          



 . 
   
              
  
                       
 
 
Template Sequence  YGLSPEDEAESAANKXWNDGVRNPLVAX. PQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALY
Template Known Secondary structure 



TT

S
.SSSS

SSTTS
TT

Template Predicted Secondary structure 




.

















Template SS confidence 















































































   358.360.........370.........380..... ....390.........400.........410.........420.........430......
 
   310.........320.........330.........340.........350.........360.........370.........380.......
Predicted Secondary structure 



























Query SS confidence 













































































Query Sequence  VGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALKLCRE
Query Conservation   




       
   
  
       
    





 
 
   
   
   
  
         
 



    
Alig confidence 
......























...











































Template Conservation   ......                        ...                                            
Template Sequence  A. . . . . . VASPTELAEXKGYLTNIVPNLAIY. . . ASSRASASATNTNTDFIAQXNGVQFSDIPFFKDTNSPQYQKLAK
Template Known Secondary structure  ......


TTT
TT
...
GGG

T
TTT

GGGG


S
Template Predicted Secondary structure  ......







...

























Template SS confidence 













































































   437 ..440.........450.........460. ........470.........480.........490.........500.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions