Job Description Q46877 Confidence 25.00% Date Thu Jan 5 12:35:29 GMT 2012 Rank 379 Aligned Residues 169 % Identity 10% Template d1qo0a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.25

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		220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																.	.																		.	.	.
Query SS confidence																.	.																		.	.	.
Query Sequence		V	D	M	I	A	T	S	H	G	V	V	W	R	D	.	.	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	.	.	.	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	V	K	I	F	N	V	A	R	S	D
Query Conservation																.	.																		.	.	.
Alig confidence																.	.																		.	.	.																															.	.
Template Conservation																																																																				.	.
Template Sequence		I	G	L	L	F	S	E	T	G	V	T	A	D	I	E	R	S	Q	R	Y	G	A	L	L	A	V	E	Q	L	N	R	E	G	G	V	G	G	R	P	I	E	T	L	S	Q	D	P	G	G	D	P	D	R	Y	R	L	C	A	E	D	F	I	R	N	R	G	.	.	V	R	F	L	V	G	C	Y	M	S	H	T
Template Known Secondary structure								S	S	S	T	T																					T	T		B	T	T	B										T	T																S		.	.									S
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.													.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	E	I	L	T	N	V	F	R	S	K	G	V	L	V	G	T	S	T	M	N	.	.	.	.	.	.	.	.	.	.	.	.	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	G	A	V	D	R	L	S	T	R	L	Q	D
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																																							.
Template Sequence		R	K	A	V	M	P	V	V	E	R	A	D	A	L	L	C	Y	P	T	P	Y	E	G	F	E	Y	S	P	N	I	V	Y	G	G	P	A	P	N	Q	N	S	A	P	L	A	A	Y	L	I	R	H	Y	G	.	E	R	V	V	F	I	G	S	D	Y	I	Y	P	R	E	S	N	H	V	M	R	H	L	Y	R	Q
Template Known Secondary structure													T							S									T	T					S			G	G	G	T												S		.	S								S	S																T
Template Predicted Secondary structure																																																							.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	F	E	M	S	L	S	L	K	A	K	W	R	P	D	Q	D	A	L	K	L	C	R	E	H	G	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	G	G	T	V	L	E	E	I	Y	I	P	L	Y	P	S	D	D	D	L	Q	R	A	V	E	R	I	Y	Q
Template Known Secondary structure		T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions