Job Description Q46877 Confidence 99.79% Date Thu Jan 5 12:35:29 GMT 2012 Rank 59 Aligned Residues 329 % Identity 18% Template c3zq4C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 Resolution 3.00 Å

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		36	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60										.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure								.																				.	.	.	.	.	.	.	.	.
Query SS confidence								.																				.	.	.	.	.	.	.	.	.
Query Sequence		N	S	Y	L	I	R	.	E	E	K	N	V	L	I	D	T	V	D	H	K	F	S	R	E	F	V	.	.	.	.	.	.	.	.	.	Q	N	L	R	N	E	I	D	L	A	D	I	D	Y	I	V	I	N	H	A	E	E	D	H	A	G	A	L	T	E	L	M	A	Q	I	P	D	T	P	I	Y	C	T	A	N
Query Conservation								.																				.	.	.	.	.	.	.	.	.
Alig confidence								.																				.	.	.	.	.	.	.	.	.							.	.																												.
Template Conservation																																											.	.																												.
Template Sequence		N	T	Y	A	V	Q	F	Q	D	E	I	V	L	I	D	A	G	I	K	F	P	E	D	E	L	L	G	I	D	Y	V	I	P	D	Y	T	Y	L	V	K	N	.	.	E	D	K	I	K	G	L	F	I	T	H	G	H	E	D	H	I	G	G	I	P	Y	L	L	R	Q	V	.	N	I	P	V	Y	G	G	K	L
Template Known Secondary structure									T	T										B				T	T	S	T	T		S											T	T	.	.	G	G	G							S								T	T						T	T		.
Template Predicted Secondary structure																																											.	.																												.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.
		106	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.																																																.	.
Query SS confidence						.	.	.	.																																																.	.
Query Sequence		A	I	D	S	.	.	.	.	I	N	G	H	H	H	H	P	E	W	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S	M	M	T	Y	L	.	.	T	G	D	A	V	L	F	S	N	D	A	F	G	Q	H	Y	C	D	E	H	L	F	N
Query Conservation						.	.	.	.																																																.	.
Alig confidence						.	.	.	.																										.											.											.	.
Template Conservation																																			.											.
Template Sequence		A	I	G	L	L	R	N	K	L	E	E	H	G	L	L	R	Q	T	K	L	N	I	I	G	E	D	D	I	V	K	F	R	K	.	T	A	V	S	F	F	R	T	T	H	.	S	I	P	D	S	Y	G	I	V	V	K	T	P	P	G	N	I	V	H	T	G	D	F	K	F	D	F	T	P	V	G	E	P	A	N
Template Known Secondary structure														S	T	T	T	T	S							T	T						T	T	.									B		.	S	S	S	S									T	T								S		B			S	S		S	S	S
Template Predicted Secondary structure																																			.											.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		180	.								.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		D	E	.	.	.	.	.	.	.	V	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	H	G	V	V	W	R	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E	D
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																																			.																.														.	.	.	.	.
Template Conservation																																													.																.														.	.	.	.	.
Template Sequence		L	T	K	M	A	E	I	G	K	E	G	V	L	C	L	L	S	D	S	T	N	S	E	N	P	E	F	T	M	S	E	R	R	V	G	E	S	I	H	D	I	F	R	.	K	V	D	G	R	I	I	F	A	T	F	A	S	N	I	.	H	R	L	Q	Q	V	I	E	A	A	V	Q	N	.	.	.	.	.	G	R
Template Known Secondary structure											T										T	T	T	T			S																		.				S								T	T			.												T	T	.	.	.	.	.	T
Template Predicted Secondary structure																																													.																.														.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.						.	250
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	R	S	K	G	V	L	V	G	T	S	T	M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G
Query Conservation
Alig confidence						.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.																				.	.	.	.	.	.	.
Template Sequence		K	V	A	V	.	.	.	.	.	F	G	R	S	M	E	S	A	I	E	I	G	Q	T	L	G	Y	I	N	.	.	.	.	.	.	.	C	P	K	N	T	F	I	E	H	N	E	I	N	R	M	P	A	N	K	V	T	I	L	C	T	G	S	Q	G	E	P	M	A	A	L	S	R	I	A	N	G	T	H	R	Q
Template Known Secondary structure						.	.	.	.	.		S												G	G	G	S			.	.	.	.	.	.	.			G	G	G	B			G	G	G	G	G	G	S		G	G	G								T	T			T	T	S							S	S			S	S
Template Predicted Secondary structure						.	.	.	.	.																				.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.								.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.																			.	.	.	.
Query SS confidence																				.	.																			.	.	.	.
Query Sequence		L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	.	.	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M	S	.	.	.	.	L	S	L	K	A	K	W	R	P	D	Q	D	A	L	K	L	C	R	E	H
Query Conservation																				.	.																			.	.	.	.
Alig confidence																				.	.																			.	.	.	.
Template Conservation
Template Sequence		I	S	I	N	P	G	D	T	V	V	F	S	S	S	P	I	P	G	N	T	I	S	V	S	R	T	I	N	Q	L	Y	R	A	G	A	E	V	I	H	G	P	L	N	D	I	H	T	S	G	H	G	G	Q	E	E	Q	K	L	M	L	R	L
Template Known Secondary structure						T	T							S				T	T															T	T						S	S	S	S						S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions