Job Description Q46877 Confidence 99.96% Date Thu Jan 5 12:35:29 GMT 2012 Rank 29 Aligned Residues 211 % Identity 14% Template c3spuB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.										.
Query SS confidence																																											.										.
Query Sequence		S	I	V	V	K	N	N	I	H	W	V	G	Q	R	D	W	E	V	R	D	F	H	G	T	E	Y	K	T	L	R	G	S	S	Y	N	S	Y	L	I	R	E	.	E	K	N	V	L	I	D	T	V	.	D	H	K	F	S	R	E	F	V	Q	N	L	R	N	E	I	D	L	A	D	I	D	Y	I	V	I	N	H
Query Conservation																																											.										.
Alig confidence																.	.	.	.	.	.	.	.	.																			.										.																		.
Template Conservation																.	.	.	.	.	.	.	.	.																																															.
Template Sequence		F	R	Q	L	A	P	N	V	W	Q	H	T	S	Y	.	.	.	.	.	.	.	.	.	L	D	M	P	G	F	G	A	V	A	S	N	G	L	I	V	R	D	G	G	R	V	L	V	V	D	T	A	W	T	D	D	Q	T	A	Q	I	L	N	W	I	K	Q	E	I	N	.	L	P	V	A	L	A	V	V	T	H
Template Known Secondary structure							T	T								.	.	.	.	.	.	.	.	.				T	T	T													T	T									S	S															T		.										S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																															.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.										.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		A	E	E	D	H	A	G	A	L	T	E	L	M	A	Q	I	P	D	T	P	I	Y	C	T	A	N	A	I	D	S	I	N	G	H	H	H	H	P	E	W	N	F	N	V	V	K	T	.	.	.	.	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S	M	M	T	Y
Query Conservation																																																	.	.	.	.
Alig confidence																	.	.																															.	.	.	.																				.
Template Conservation																	.	.																																																						.
Template Sequence		A	H	Q	D	K	M	G	G	M	D	A	L	H	A	A	.	.	G	I	A	T	Y	A	N	A	L	S	N	Q	L	A	P	Q	E	G	M	V	A	A	Q	H	S	L	T	F	A	A	N	G	W	V	E	P	A	T	A	P	N	F	G	P	L	K	V	F	Y	P	G	P	G	.	H	T	S	D	N	I	T	V	G
Template Known Secondary structure		S	S					T	T							T	.	.	T													G	G	G	G	T					S					B		T	T	S	B	B		G	G	G	S	T	T		T	T								S	S	.	S	S	S	S
Template Predicted Secondary structure																	.	.																																																						.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	G	D	A	V	L	F	S	N	D	A	F	G	Q	H	Y	C	D	E	H	L	F	N	D	E	V	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	H	G	V	V	W	R	D	N	P
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	G	T	D	I	A	F	G	G	C	L	I	K	D	S	K	A	K	S	L	G	N	L	G	D	A	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	Y	A	A	S	A	R	A	F	G	A	A	F	P	K	A	S	M	I	V	M	S	H	S	A	P	D	S	R	A	A
Template Known Secondary structure			T	T	S	S					T	T	T				T	T		S						T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T												S	T	T							T	T						T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.																				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	I	V	E	L	Y	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	H	T	A	R	M	A	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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