Job Description Q46877 Confidence 98.80% Date Thu Jan 5 12:35:29 GMT 2012 Rank 135 Aligned Residues 174 % Identity 15% Template c3rpcD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:possible metal-dependent hydrolase; PDBTitle: the crystal structure of a possible metal-dependent hydrolase from2 veillonella parvula dsm 2008 Resolution 1.49 Å

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		37	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.																									.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Y	L	I	R	.	E	E	K	N	V	L	I	D	T	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	F	S	R	E	F	V	Q	N	L	R	N	E	I	D	L	A	D	I	D	Y	I	V	I	N	H	A	E	E	D	H	A	G	A	L	T	E	L
Query Conservation							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	K	L	T	I	K	N	T	T	F	L	I	D	P	F	L	A	P	K	D	T	Y	P	G	F	E	G	T	F	N	Y	Q	Q	R	X	P	X	V	D	L	P	L	S	X	D	D	.	.	.	.	.	.	.	.	.	L	L	S	N	V	T	A	V	V	V	T	H	T	H	L	D	H	W	D	D	T	A	I	N
Template Known Secondary structure								T	T						S						T	T		B				T	T	B	T	T	T	T	S		B		S	S			S	S					.	.	.	.	.	.	.	.	.			T	T							S				G	G	G	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.										.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																		150	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	Q	I	P	D	T	P	I	Y	C	T	A	N	A	I	D	S	I	N	G	H	H	H	H	P	E	W	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	M	M	T
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.									.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.									.	.	.
Template Sequence		S	I	P	K	S	L	P	I	F	V	Q	N	T	A	D	K	E	L	I	T	S	Q	G	F	I	D	V	R	I	I	.	.	.	.	.	F	E	S	L	E	F	N	G	.	.	.	I	T	L	R	K	T	G	G	S	H	G	T	V	E	X	Y	A	N	P	V	L	A	P	L	A	G	D	A	X	G	V	I	F	E
Template Known Secondary structure			S		T	T	S					S	S										T	T		S						.	.	.	.	.	S	S					T	T	.	.	.										S	S						T	S	T	T
Template Predicted Secondary structure																																.	.	.	.	.									.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.															.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	T	G	D	A	V	L	F	S	N	D	A	F	G	Q	H	Y	C	D	E	H	L	F	N	D	E	V	D	Q	T	E	L	F	E	Q	C	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Template Sequence		A	A	D	E	P	T	V	Y	L	V	G	D	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	T	S	D	V	E	K	A	L	L	R	F	D	P	N	V	I	I	X	N	T	G	Y	A	Q	I	L	G	F	E	D	S	I	I	X	G	T	K	D	I	G	R	X	V	V	R	.	.	K	P	E
Template Known Secondary structure			T	T	S								S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S														S							S		B		B	T	T		S	S		S	S													.	.		T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.																.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.
		221	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		D	M	I	A	T	S	H	.	.	.	G	V	V	W	R	D	N	P	T	Q	I	V	E	L	Y	L	K
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		A	K	I	I	A	V	H	X	D	T	V	N	H	T	A	T	S	R	K	D	V	R	K	F	I	K	G
Template Known Secondary structure		S						S		S	S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions