Job Description Q46877 Confidence 64.27% Date Thu Jan 5 12:35:29 GMT 2012 Rank 247 Aligned Residues 183 % Identity 11% Template c3n0wA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution Resolution 1.88 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.												.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.							.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.							.	.
Query Sequence		I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	.	.	.	.	.	.	.	.	.	.	.	H	G	V	V	W	R	.	.	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.							.	.
Alig confidence																				.											.	.	.	.	.	.	.	.	.	.	.							.	.																											.
Template Conservation																				.																																																								.
Template Sequence		I	F	D	V	V	N	S	G	T	A	L	A	I	N	N	L	V	K	.	D	K	K	K	L	A	F	I	T	A	A	A	A	D	Q	I	G	G	T	E	C	N	G	Y	G	I	G	F	L	Y	N	F	T	S	I	V	K	T	V	V	Q	A	Q	L	A	K	G	Y	K	T	W	F	L	X	L	.	P	D	A	A	Y
Template Known Secondary structure																				.			T							S				T	T	T	T	T	T	T			S	S					S																	T	T									.		S	S
Template Predicted Secondary structure																				.																																																								.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																				.																						.	.
Query SS confidence																				.																						.	.
Query Sequence		T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	.	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	.	.	R	S	K	G	V	L	V	G	T	S	T	M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S
Query Conservation																				.																						.	.
Alig confidence																				.																						.	.											.	.	.	.	.	.																				.
Template Conservation																																																						.	.	.	.	.	.																				.
Template Sequence		G	D	L	X	N	A	A	I	R	R	E	L	T	A	G	G	G	Q	I	V	G	S	V	R	F	P	F	E	T	Q	D	F	S	S	Y	L	L	Q	A	K	A	S	G	A	Q	L	I	V	S	T	S	G	.	.	.	.	.	.	G	A	A	N	I	N	I	X	K	Q	A	R	E	F	G	L	P	S	K	.	T	Q
Template Known Secondary structure																	T											T	T															T		S								.	.	.	.	.	.														T	T		S		S	.	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.																				.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	G	S	H	G	W	S	G	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M	S	L	S	L	K	A	K	W	R	P	D	Q	D	A	L	K	L	C	R	E	H	G	R	E	I
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		K	V	G	G	X	I	D	I	L	T	D	V	K	S	A	G	L	R	V	X	Q	G	Q	E	.	.	.	Y	A	T	S	F	Y	W	N	X	D	D	R	T	R	A	F	A	K	R	F	Y	A	K	X
Template Known Secondary structure							B															T	T			.	.	.				S			T	T	S	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions