 |
Job Description | Q46877 | Confidence | 49.46% | Date | Thu Jan 5 12:35:29 GMT 2012 |
Rank | 278 | Aligned Residues | 89 |
% Identity | 13% | Template | c3m8uA_ |
PDB info |
PDB header:transport protein | Chain: A: PDB Molecule:heme-binding protein a; |
PDBTitle: crystal structure of glutathione-binding protein a (gbpa) from2 haemophilus parasuis sh0165 in complex with glutathione disulfide3 (gssg)
|
Resolution | 1.85 Å |
|
 |
  |   |
236 | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | Q | I | V | E | L | Y | L | K | W | A | A | D | Y | Q | E | D | R | I | T | I | F | Y | D | T | M | S | N | N | T | R | M | M | A | D | A | I | A | Q | G | I | A | E | T | D | P | R | V | A | V | K | I | F | N | V | A | R | S | D | K | N | E | I | L | T | N | V | F | R | S | K | G | V | L | V | G | T | S | T | M |
Query Conservation |   |
  |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |
|
|
|   |
|   |
|
|
|
|   |   |
|
|   |   |
|
|   |
|
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
| . | . |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   | . |   |   |   |
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
K | Q | L | L | K | E | A | G | F | E | N | G | F | E | T | D | I | W | V | Q | P | V | V | R | A | S | N | P | N | P | R | R | M | A | E | L | V | Q | S | D | W | E | K | V | G | . |
. |
V | K | S | K | L | V | S | Y | E | W | G | D | Y | I | K | R | T | K | A | . |
G | E | L | T | A | G | T | Y | G | W | S | G | D |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T |
| T | T |
|  |  |  |  |  |  |
|
| S | S |
| B | T | T | B | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | . | . |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  | T | . | T |
|
| S |  |  |  |  |  |  |  |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
356 | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | |
|
. | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | |
420 | . | . | . | . | . | . | . | . | . | 430 | . | . |
  |
  |   |
316 | . | . | . | 320 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | N | V | M | M | P | K | I | A | G | L | V |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
N | G | D | P | D | N | F | L | S | P | L | F |
Template Known Secondary structure |   |
S | S |
| T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
433 | . | . | . | . | . | . | 440 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|