Job Description Q46877 Confidence 59.62% Date Thu Jan 5 12:35:29 GMT 2012 Rank 258 Aligned Residues 152 % Identity 8% Template c3lopA_ PDB info PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum Resolution 1.55 Å

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.
Predicted Secondary structure																																																						.																									.	.
Query SS confidence																																																						.																									.	.
Query Sequence		W	R	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	.	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	R	S	K	.	.	G
Query Conservation																																																						.																									.	.
Alig confidence																																.																						.																									.	.
Template Conservation																																.
Template Sequence		I	K	A	S	Y	Q	Q	E	I	D	K	X	I	T	A	L	V	T	I	G	V	T	R	I	G	V	L	Y	Q	E	.	D	A	L	G	K	E	A	I	T	G	V	E	R	T	L	K	A	H	A	L	A	I	T	A	X	A	S	Y	P	R	N	T	A	N	V	G	P	A	V	D	K	L	L	A	A	D	V	Q	A
Template Known Secondary structure			S																	T	T										T	.	T																T	T	T				S							T	T	S													S			S
Template Predicted Secondary structure																																.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	V	G	T	S	T	M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M	S	L	S	L	K	A	K	W	R	P	D	Q	D	A	L	K	L	C	R	E
Query Conservation
Alig confidence									.	.	.	.	.	.																			.	.	.
Template Conservation									.	.	.	.	.	.																			.	.	.
Template Sequence		I	F	L	G	A	T	A	.	.	.	.	.	.	E	P	A	A	Q	F	V	R	Q	Y	R	A	R	G	G	E	A	Q	.	.	.	L	L	G	L	S	S	I	D	P	G	I	L	Q	K	V	A	G	L	D	A	V	R	G	Y	S	L	A	L	V	X	P	N	P	G	K	S	V	N	P	V	I	R	E	F	N	R
Template Known Secondary structure						S			.	.	.	.	.	.													T	T					.	.	.					T	T	S															T	T							S			T	T		T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.																			.	.	.
Template SS confidence
		230	.	.	.	.	.	.							.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		388	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	R	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	A	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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