Job Description Q46877 Confidence 23.05% Date Thu Jan 5 12:35:29 GMT 2012 Rank 395 Aligned Residues 142 % Identity 13% Template c3ip5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine Resolution 1.35 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.														230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	H	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	V	W	R	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.														.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																				.																																																									.
Template Sequence		V	V	G	H	F	N	S	G	V	S	I	P	A	S	E	V	Y	A	.	E	N	G	I	L	E	I	T	P	A	A	T	N	P	V	F	T	E	R	G	L	W	N	T	F	R	T	C	G	R	D	D	Q	Q	G	G	I	A	G	K	Y	L	A	D	H	F	K	D	A	K	V	A	I	I	H	D	.	K	T	P	Y
Template Known Secondary structure						S	S													.		T	T						S	S				G	G	G	G	S	S			T	T				S	S																			T	T									.	S	S
Template Predicted Secondary structure																				.																																																									.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																						.																				.	.
Query SS confidence																						.																				.	.
Query Sequence		T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	.	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	.	.	R	S	K	G	V	L	V	G	T	S	T	M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S
Query Conservation																						.																				.	.
Alig confidence																						.																				.	.											.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		G	Q	G	L	A	D	E	T	K	K	A	A	N	A	A	G	V	T	E	V	M	Y	E	G	V	N	V	G	D	K	D	F	S	A	L	I	S	K	M	K	E	A	G	V	S	I	I	Y	W	G	G	L	.	.	.	.	.	.	H	T	E	A	G	L	I	I	R	Q	A	A	D	Q	G	L	K	A	K	L	V	S
Template Known Secondary structure																T	T				S							T	T														T	T								S		.	.	.	.	.	.														T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		342	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	G	S	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	G	I	V	S
Template Known Secondary structure			G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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