Job Description Q46877 Confidence 66.65% Date Thu Jan 5 12:35:29 GMT 2012 Rank 243 Aligned Residues 149 % Identity 5% Template c3i09A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution Resolution 1.80 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.												.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.							.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.							.	.
Query Sequence		I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	.	.	.	.	.	.	.	.	.	.	.	H	G	V	V	W	R	.	.	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.							.	.
Alig confidence																				.											.	.	.	.	.	.	.	.	.	.	.							.	.																													.
Template Conservation																				.																																																										.
Template Sequence		L	V	G	G	T	N	S	A	T	A	L	S	X	N	Q	V	A	A	.	E	K	K	K	V	Y	I	N	I	G	A	G	A	D	T	L	T	N	E	Q	C	T	P	Y	T	V	H	Y	A	Y	D	T	X	A	L	A	K	G	T	G	S	A	V	V	K	Q	G	G	K	T	W	F	F	L	T	A	D	.	Y	A	F
Template Known Secondary structure						S														.			T							S				G	G	G	G	T	T	T			T	T					S																	T	T										S	.	S
Template Predicted Secondary structure																				.																																																										.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																				.																						.	.
Query SS confidence																				.																						.	.
Query Sequence		T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	.	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	.	.	R	S	K	G	V	L	V	G	T	S	T	M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S
Query Conservation																				.																						.	.
Alig confidence																				.																						.	.												.	.	.	.	.	.																			.	.
Template Conservation																																																							.	.	.	.	.	.																			.	.
Template Sequence		G	K	A	L	E	K	N	T	A	D	V	V	K	A	N	G	G	K	V	L	G	E	V	R	H	P	L	S	A	S	D	F	S	S	F	L	L	Q	A	Q	S	S	K	A	Q	I	L	G	L	A	N	A	G	.	.	.	.	.	.	G	D	T	V	N	A	I	K	A	A	K	E	F	G	I	T	K	T	.	.	X
Template Known Secondary structure																T	T											T	T		S												T			S									.	.	.	.	.	.													T	T	G	G	G	T	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.																			.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	G	S	H	G	W	S	G	G	A	V	D	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	A	A	L	L	X	F	I	N	D	V	H	A	L
Template Known Secondary structure						S	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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