Job Description Q46877 Confidence 79.84% Date Thu Jan 5 12:35:29 GMT 2012 Rank 228 Aligned Residues 142 % Identity 13% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.										.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.							.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.							.	.
Query Sequence		I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	.	.	.	.	.	.	.	.	.	H	G	V	V	W	R	.	.	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R
Query Conservation																															.	.	.	.	.	.	.	.	.							.	.
Alig confidence																				.											.	.	.	.	.	.	.	.	.							.	.																																		.
Template Conservation																				.																																																													.
Template Sequence		I	F	G	P	S	H	S	S	S	A	N	A	V	Q	S	I	C	N	.	A	L	G	V	P	H	I	Q	T	R	W	K	H	Q	V	S	D	N	K	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	L	V	Q	F	F	K	W	K	T	V	T	V	V	Y	D	D	S	T	G	L	I	.
Template Known Secondary structure						S	S													.		T	T			B				S						S	S					S					S	B		T	T	T												T	T		S							S	S	T					.
Template Predicted Secondary structure																				.																																																													.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	.	.	F	R	S	K	G	V	L	V	G	T	S	T	M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S	A	F	G
Query Conservation																																						.	.
Alig confidence		.																																				.	.													.	.	.	.	.	.
Template Conservation		.																																																		.	.	.	.	.	.
Template Sequence		.	R	L	Q	E	L	I	K	A	P	S	R	Y	N	L	R	L	K	I	R	Q	L	P	A	D	T	K	D	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	S	H	.	.	.	.	.	.	E	M	A	A	G	I	L	K	Q	A	L	A	M	G	M	M	T	E	Y	Y	H	Y	I	F
Template Known Secondary structure		.		S					T	G	G	G	T	S	S										S	S	G	G	G											T	T								S			.	.	.	.	.	.														T			S	T	T
Template Predicted Secondary structure		.																																																		.	.	.	.	.	.
Template SS confidence
			153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.							.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		345	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	G	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	L	D
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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