Job Description Q46877 Confidence 51.51% Date Thu Jan 5 12:35:29 GMT 2012 Rank 274 Aligned Residues 159 % Identity 11% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		M	I	A	T	S	H	G	V	V	W	R	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	.	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T
Query Conservation																																																																	.
Alig confidence																																							.																										.
Template Conservation																																							.
Template Sequence		Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I	A	I	I	T	.	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A
Template Known Secondary structure			S	S			T																	T	T	S				S	S	S							.		S	S														G	G	G	G	T											S	S		S
Template Predicted Secondary structure																																							.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		301	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		N	V	F	R	S	.	.	K	G	V	L	V	G	T	S	T	M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M	S	L	S	L	K	A	K	W	R	P	D
Query Conservation							.	.
Alig confidence							.	.						.	.	.	.	.																							.	.	.										.	.	.
Template Conservation														.	.	.	.	.																							.	.	.										.	.	.
Template Sequence		K	L	R	A	D	P	P	A	V	I	V	V	.	.	.	.	.	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T	N	S	.	.	.	L	V	Y	L	Q	Y	G	A	S	.	.	.	L	A	A	F	R	D	I	A	G	D	N	S	V	G	V	T	Y	A	T	V	L	G	T	L	Q	D
Template Known Secondary structure						S			S					.	.	.	.	.																T	T	S			S		.	.	.						S	G	G	G	.	.	.	S								G	G	G	G	T	T						S	S				S	S
Template Predicted Secondary structure														.	.	.	.	.																							.	.	.										.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.						.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		379	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	A	L	K	L	C	R	E	H	G	R	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	M	G	D	A	F	A	K	A	Y	K	E	R	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions