Job Description Q46877 Confidence 99.78% Date Thu Jan 5 12:35:29 GMT 2012 Rank 65 Aligned Residues 332 % Identity 16% Template c3bk2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:metal dependent hydrolase; PDBTitle: crystal structure analysis of the rnase j/ump complex Resolution 2.10 Å

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		36	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure								.												.	.	.	.	.	.															.																												.	.	.	.
Query SS confidence								.												.	.	.	.	.	.															.																												.	.	.	.
Query Sequence		N	S	Y	L	I	R	.	E	E	K	N	V	L	I	D	T	V	D	.	.	.	.	.	.	H	K	F	S	R	E	F	V	Q	N	L	R	N	E	.	I	D	L	A	D	I	D	Y	I	V	I	N	H	A	E	E	D	H	A	G	A	L	T	E	L	M	A	.	.	.	.	Q	I	P	D	T	P	I	Y	C	T
Query Conservation								.												.	.	.	.	.	.															.																												.	.	.	.
Alig confidence								.												.	.	.	.	.	.															.																												.	.	.	.
Template Conservation
Template Sequence		N	I	T	V	F	R	F	R	D	E	I	F	V	L	D	G	G	L	A	F	P	E	E	G	X	P	G	V	D	L	L	I	P	R	V	D	Y	L	I	E	H	R	H	K	I	K	A	W	V	L	T	H	G	H	E	D	H	I	G	G	L	P	F	L	L	P	X	I	F	G	K	E	S	P	V	P	I	Y	G	A
Template Known Secondary structure									T	T										B				T	T	S	T	T														T	G	G	G															T	T											S				S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		104	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																																											.	.
Query SS confidence													.	.	.	.	.																																											.	.
Query Sequence		A	N	A	I	D	S	I	N	G	H	H	.	.	.	.	.	H	H	P	E	W	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S	M	M	T	Y	L	.	.	T	G	D	A	V	L	F	S	N	D	A	F	G	Q	H	Y	C	D	E	H
Query Conservation													.	.	.	.	.																																											.	.
Alig confidence													.	.	.	.	.																																.											.	.
Template Conservation																																																	.
Template Sequence		R	L	T	L	G	L	L	R	G	K	L	E	E	F	G	L	R	P	G	A	F	N	L	K	E	I	S	P	D	D	R	I	Q	V	G	R	Y	F	T	L	D	L	F	R	X	T	H	.	S	I	P	D	N	S	G	V	V	I	R	T	P	I	G	T	I	V	H	T	G	D	F	K	L	D	P	T	P	I	D	G
Template Known Secondary structure															T	T			S	T	T	S							T	T						T	T	T											.	S	S	S	S									T	T								S					S	S		T	T	S
Template Predicted Secondary structure																																																	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		177	.	.	180	.	.									.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.
Query Sequence		L	F	N	D	E	V	.	.	.	.	.	.	.	.	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	H	G	V	V	W	R	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D
Query Conservation								.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																																		.																.														.	.	.
Template Conservation																																																	.																.														.	.	.
Template Sequence		K	V	S	H	L	A	K	V	A	Q	A	G	A	E	G	V	L	L	L	I	A	D	A	T	N	A	E	R	P	G	Y	T	P	S	E	X	E	I	A	K	E	L	D	R	V	I	G	.	R	A	P	G	R	V	F	V	T	T	F	A	S	H	I	.	H	R	I	Q	S	V	I	W	A	A	E	K	Y	.	.	.
Template Known Secondary structure																		S							T	T	T	T			S																		.			S	S								T	T			.													T	.	.	.
Template Predicted Secondary structure																																																	.																.														.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	R	S	K	G	V	L	V	G	T	S	T	M	N	N	V	M	M	P	K	I	A	G	L	V	E
Query Conservation
Alig confidence		.	.											.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation		.	.											.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		.	.	G	R	K	V	A	X	E	G	R	S	.	.	.	.	.	.	.	.	X	L	K	F	S	R	I	A	L	E	L	G	Y	L	K	.	.	.	.	.	V	K	D	R	L	Y	T	L	E	E	V	K	D	L	P	D	H	Q	V	L	I	L	A	T	G	S	Q	G	Q	P	X	S	V	L	H	R	L	A	F	E
Template Known Secondary structure		.	.	T										.	.	.	.	.	.	.	.											T	T	S			.	.	.	.	.		S	S			B		T	G	G	G	T	T	S		G	G	G								T	T	S		S									T	T
Template Predicted Secondary structure		.	.											.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
				258	.	260	.	.	.	.	.	.	.									.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																			.	.	.	.
Query SS confidence																								.	.																			.	.	.	.
Query Sequence		E	M	T	G	L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	.	.	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M	S	.	.	.	.	L	S	L	K	A	K	W	R	P	D	Q	D	A	L	K	L	C	R	E	H
Query Conservation																								.	.																			.	.	.	.
Alig confidence																								.	.																			.	.	.	.
Template Conservation
Template Sequence		G	H	A	K	X	A	I	K	P	G	D	T	V	I	L	S	S	S	P	I	P	G	N	E	E	A	V	N	R	V	I	N	R	L	Y	A	L	G	A	Y	V	L	Y	P	P	T	Y	K	V	H	A	S	G	H	A	S	Q	E	E	L	K	L	I	L	N	L
Template Known Secondary structure				S	S					T	T							S				T	T															T	T						T	T	T	S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions