Job Description Q46877 Confidence 99.61% Date Thu Jan 5 12:35:29 GMT 2012 Rank 79 Aligned Residues 213 % Identity 17% Template c3af5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii Resolution 2.60 Å

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		36	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.
Predicted Secondary structure								.												.	.	.	.	.								.	.	.	.																																					.
Query SS confidence								.												.	.	.	.	.								.	.	.	.																																					.
Query Sequence		N	S	Y	L	I	R	.	E	E	K	N	V	L	I	D	T	V	D	.	.	.	.	.	H	K	F	S	R	E	F	.	.	.	.	V	Q	N	L	R	N	E	I	D	L	A	D	I	D	Y	I	V	I	N	H	A	E	E	D	H	A	G	A	L	T	E	L	M	A	Q	I	.	P	D	T	P	I	Y	C	T	A
Query Conservation								.												.	.	.	.	.								.	.	.	.																																					.
Alig confidence								.												.	.	.	.	.								.	.	.	.																																					.
Template Conservation
Template Sequence		S	A	L	L	V	Q	T	D	E	S	F	V	L	V	D	F	G	V	N	V	A	M	L	N	D	P	Y	K	A	F	P	H	F	D	A	P	E	F	Q	Y	V	L	R	E	G	L	L	D	A	I	I	I	T	H	A	H	L	D	H	C	G	M	L	P	Y	L	F	R	Y	N	L	F	D	G	P	I	Y	T	T	P
Template Known Secondary structure									S	S											G	G	G	T	T						S			T	T										T	T								S		S	S					T	T							T	T				S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		105	.	.	.	.	110	.																						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Query Sequence		N	A	I	D	S	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	H	H	H	P	E	W	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S	M	M	T	Y	L	.	.	.	.	T	G	D
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.		.											.	.	.	.
Template Conservation																																																														.		.
Template Sequence		P	T	R	D	L	M	V	L	L	Q	K	D	F	I	E	I	Q	Q	S	N	G	Q	D	P	L	Y	R	P	R	D	I	K	E	V	I	K	H	T	I	T	L	D	Y	G	E	V	R	D	I	S	P	D	I	R	L	T	L	H	N	A	.	G	.	H	I	L	G	S	A	I	V	H	L	H	I	G	N	G	L	H
Template Known Secondary structure																					T	T				S	S											T						T	T							T	T									.	S	.	S	S	T	T									T	T	T	T	T
Template Predicted Secondary structure																																																														.		.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.
Predicted Secondary structure									.	.																																																																	.	.
Query SS confidence									.	.																																																																	.	.
Query Sequence		A	V	L	F	S	N	D	.	.	A	F	G	Q	H	Y	C	D	E	H	L	F	N	D	E	V	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	H	G	V	V	.	.	W	R	D	N	P
Query Conservation									.	.																																																																	.	.
Alig confidence									.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	A	I	T	G	D	F	K	F	I	P	T	R	L	L	E	P	A	N	A	K	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	E	T	L	V	M	E	S	T	Y	G	G	A	N	D	I	Q	M	P	R
Template Known Secondary structure								S				S			S	S							B		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S							T	T		S	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.																																				.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E	D	.	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	V
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		E	E	A	E	K	R	L	I	E	V	I	H	N	T	I	K	R	G	G	K	V	L	I	P	A	M	A	V	G	R	A	Q	E	V	M	M	V	L	E	E	Y	A	R	I	G	G	I	E	V	P	I
Template Known Secondary structure																		T	T									T	T	T														T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions