Job Description Q46877 Confidence 99.87% Date Thu Jan 5 12:35:29 GMT 2012 Rank 51 Aligned Residues 149 % Identity 21% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.																	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	N	V	F	R	S	K	G	V	L	V	G	T	S
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																				.	.
Template Sequence		C	K	P	N	I	L	V	L	F	Y	G	.	Y	G	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	G	.	.	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	M	R	W	A	D	G	F	A	I	G	S	P
Template Known Secondary structure													.	S	S																	T	.	.												S		G	G	G		T	T			G	G	G	S	T	T	S		B										S
Template Predicted Secondary structure													.																				.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350					.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																			.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.																			.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	.	.	.	.	L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	.	.	.	.	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.																			.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																			.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	Y	G	N	M	A	G	G	L	K	T	F	L	D	T	T	A	I	L	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A	S	T	V	H	G	G	H	E	T	T	I	L	T	M	S	T	Y	A	Y	H	F	G	M	I	I	V	P	I	G	Y	G	I	P	E	L	F	Q	T	T	T	G	G	G
Template Known Secondary structure			B	T	T	B											T	T					T	T	T	T	T	T	T									B	S	S	T	T	S	S	S	S							T							T							T	T		S	T						S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
						369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	S	L	K	A	K	W	R	P	D	Q	D	A	L	K	L	C	R	E	H	G	R	E	I	A	R	Q	W	A	L	A	P	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		P	Y	G	A	T	H	L	G	S	K	E	E	L	D	E	M	E	R	K	I	A	R	F	Q	G	K	R	I	T	E	V	A	K	A	I	K	C
Template Known Secondary structure		T	T	B				B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions