Job Description Q46877 Confidence 99.60% Date Thu Jan 5 12:35:29 GMT 2012 Rank 82 Aligned Residues 231 % Identity 20% Template c2ycbA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus Resolution 3.10 Å

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		36	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure								.											.	.	.																.
Query SS confidence								.											.	.	.																.
Query Sequence		N	S	Y	L	I	R	.	E	E	K	N	V	L	I	D	T	V	.	.	.	D	H	K	F	S	R	E	F	V	Q	N	L	R	N	E	.	I	D	L	A	D	I	D	Y	I	V	I	N	H	A	E	E	D	H	A	G	A	L	T	E	L	M	A	Q	I	P	D	T	P	I	Y	C	T	A	N	A	I	D	S	I
Query Conservation								.											.	.	.																.
Alig confidence								.											.	.	.																.
Template Conservation
Template Sequence		S	C	L	Y	L	Q	T	P	N	S	R	V	L	L	D	C	G	V	N	V	A	G	G	D	D	K	N	S	Y	P	Y	L	N	V	P	E	F	T	L	D	S	L	D	A	V	I	I	T	H	A	H	L	D	H	S	G	F	L	P	Y	L	Y	H	Y	G	Y	D	G	P	V	Y	C	T	A	P	T	R	D	L	M
Template Known Secondary structure									S	S												S	S							S			T	T	S	T	T			T	T	T							S	S	S	S					T	T							T	T			S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		111	.	.	.	.	.	.																						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Query Sequence		N	G	H	H	H	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S	M	M	T	Y	L	.	.	.	.	T	G	D	A	V	L	F	S	N
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.		.											.	.	.	.
Template Conservation																																																								.		.
Template Sequence		T	L	L	Q	L	D	H	I	D	I	A	H	R	E	D	E	P	L	P	F	N	V	K	H	V	K	K	S	V	K	H	T	I	T	L	D	Y	G	E	V	T	D	I	A	P	D	I	R	L	T	L	H	N	A	.	G	.	H	I	L	G	S	A	M	A	H	L	H	I	G	D	G	Q	H	N	M	V	Y	T	G
Template Known Secondary structure																T				S												T						T	T							T	T									.		.	S	S	T	T									T	T	T	T	T
Template Predicted Secondary structure																																																								.		.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		166	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure				.																																																	.	.
Query SS confidence				.																																																	.	.
Query Sequence		D	A	.	F	G	Q	H	Y	C	D	E	H	L	F	N	D	E	V	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	.	.	F	N	L	P	V	D	M	I	A	T	S	H	G	V	V	W	R	D	N	P	T	Q	I	V	E	L	Y
Query Conservation				.																																																	.	.
Alig confidence				.																																																	.	.															.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		D	F	K	Y	E	Q	S	R	L	L	E	A	A	A	N	R	F	P	R	I	E	T	L	V	M	E	S	T	Y	G	G	H	E	D	V	Q	P	S	R	N	R	A	E	K	E	L	V	K	T	I	Y	S	T	L	R	R	G	G	K	I	L	I	P	V	F	A	V	.	.	.	G	R	A	Q	E	L	M	I	V	L
Template Known Secondary structure		S			S	S			S	S	S								S			S							T	T		S	G	G	G																							T									T	T	.	.	.	T
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.				.	420	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	W	A	A	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	Y	I	R	T	G	I	I	D	E	V	P	V	Y	I	D	G	M	I	W	E	A	N	A	I	H	T	A
Template Known Secondary structure							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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