Job Description Q46877 Confidence 99.61% Date Thu Jan 5 12:35:29 GMT 2012 Rank 78 Aligned Residues 231 % Identity 16% Template c2xr1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

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		36	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure								.																			.	.	.
Query SS confidence								.																			.	.	.
Query Sequence		N	S	Y	L	I	R	.	E	E	K	N	V	L	I	D	T	V	D	H	K	F	S	R	E	F	.	.	.	V	Q	N	L	R	N	E	I	D	L	A	D	I	D	Y	I	V	I	N	H	A	E	E	D	H	A	G	A	L	T	E	L	M	A	Q	I	P	D	T	P	I	Y	C	T	A	N	A	I	D	S	I	N
Query Conservation								.																			.	.	.
Alig confidence								.																			.	.	.
Template Conservation
Template Sequence		S	C	F	L	L	S	T	P	E	S	R	I	L	I	D	C	G	V	N	V	G	S	D	E	N	M	T	P	Y	L	Y	V	P	E	V	F	P	L	N	Q	I	D	A	V	I	V	T	H	A	H	L	D	H	Q	G	L	V	P	L	L	F	K	Y	G	Y	E	G	P	V	Y	C	T	P	P	T	R	D	L	M	V
Template Known Secondary structure									S	S												S	S		S	S					T	T	S	T	T	T		S	G	G	G								S	S						T	T							T	T			S
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
													112	.	.	.	.	.	.	.											120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	G	H	H	H	H	P	E	W	.	.	.	.	.	.	.	.	.	.	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S	M	M	T	Y	L	T	.	.	.	.	G	D	A	V	L	F	S	N	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.																									.		.												.	.	.	.
Template Conservation																																																							.		.
Template Sequence		L	L	Q	L	D	Y	I	D	V	A	A	K	E	G	K	K	I	P	Y	E	S	G	M	V	A	K	T	L	K	H	T	I	P	L	D	Y	E	E	V	T	D	I	A	P	D	I	K	L	T	F	H	N	A	.	G	.	H	I	L	G	S	A	I	S	H	F	H	I	G	D	G	L	H	N	V	V	F	T	G	D
Template Known Secondary structure															T					S		T									T						T	T							T	T									.	S	.	S	S	T	T									T	T	T	T								S
Template Predicted Secondary structure																																																							.		.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		167		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure			.																																															.	.
Query SS confidence			.																																															.	.
Query Sequence		A	.	F	G	Q	H	Y	C	D	E	H	L	F	N	D	E	V	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	.	.	L	G	F	N	L	P	V	D	M	I	A	T	S	H	G	V	V	W	R	D	N	P	T	Q	I	V	E	L	Y	L
Query Conservation			.																																															.	.
Alig confidence			.																																															.	.																	.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		Y	K	Y	E	K	T	R	L	F	D	P	A	V	N	K	F	P	R	V	E	T	V	I	S	E	A	T	Y	G	N	A	N	A	F	Q	P	A	L	K	D	A	E	K	H	L	Q	M	V	V	K	N	T	I	E	R	G	G	I	A	V	I	P	A	F	A	V	.	.	.	G	R	S	Q	E	V	M	I	V	L	E
Template Known Secondary structure					S			S	S							B		S			S							T	T		S	T	T																							T	T									T	T	.	.	.	T
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.				.	420	.	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	W	A	A	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	I	R	K	G	L	I	P	E	V	P	V	Y	L	D	G	M	I	W	E	A	T	A	I	H	A	T
Template Known Secondary structure						T	T	S	S		S							S	S
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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