Job Description Q46877 Confidence 99.84% Date Thu Jan 5 12:35:29 GMT 2012 Rank 56 Aligned Residues 189 % Identity 18% Template c2r2dC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:zn-dependent hydrolases; PDBTitle: structure of a quorum-quenching lactonase (aiib) from agrobacterium2 tumefaciens Resolution 1.75 Å

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		34	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.																							.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		S	Y	N	S	Y	L	I	R	E	.	E	K	N	V	L	I	D	T	V	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	S	R	E	F	V	Q	N	L	R	N	E	.	I	D	L	A	D	I	D	Y	I	V	I	N	H	A	E	E	D	H	A	G	A	L	T
Query Conservation											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		P	V	S	A	Y	L	I	Q	C	T	D	A	T	V	L	Y	D	T	G	C	H	P	E	C	M	G	T	N	G	R	W	P	A	Q	S	Q	L	N	A	P	Y	I	G	A	S	E	C	N	L	P	E	R	L	R	Q	L	G	L	S	P	D	D	I	S	T	V	V	L	S	H	L	H	N	D	H	A	G	C	V	E
Template Known Secondary structure											T	T									S		T	T		S	S	T	T		S	S								S		B				T	T		S								T	T			G	G	G		S					S			S	T	T	T	S	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	M	A	Q	I	P	D	T	P	I	Y	C	T	A	N	A	I	D	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	H	H	H	H	P	E	W	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.											.
Template Conservation		.	.	.	.																																																												.											.
Template Sequence		.	.	.	.	Y	F	G	K	S	R	L	I	A	H	E	D	E	F	A	T	A	V	R	Y	F	A	T	G	D	H	S	S	P	Y	I	V	K	D	I	E	A	W	L	A	T	P	R	N	W	D	L	V	G	R	D	E	R	E	R	E	L	A	P	.	G	V	N	L	L	N	F	G	T	G	.	H	A	S	G	M
Template Known Secondary structure		.	.	.	.	G		S	S	S																			T			S	S	S	S									T	T	S									T	T								T	.	T								S	S	.	S	S	S	S
Template Predicted Secondary structure		.	.	.	.																																																												.											.
Template SS confidence
						122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190		.	.	.	.	.
		152	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																																																													.
Query SS confidence							.	.	.																																																													.
Query Sequence		M	M	T	Y	L	.	.	.	T	G	D	A	V	L	F	S	N	D	A	F	G	Q	H	Y	C	D	E	H	L	F	N	D	E	V	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	.	N	L	P	V	D	M	I	A	T	S	H
Query Conservation							.	.	.																																																													.
Alig confidence							.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	L	A	V	R	L	E	K	Q	P	G	F	L	L	V	S	D	A	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	A	T	N	Y	G	P	P	A	R	R	A	G	V	L	H	D	T	I	G	Y	D	R	T	V	S	H	I	R	Q	Y	A	E	S	R	S	L	T	V	L	F	G	H
Template Known Secondary structure									S	S	S								T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	S					S	S		S																				T						S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	V	W	R	D	N	P	T	Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	E
Query Conservation
Alig confidence			.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		D	.	.	.	.	.	.	.	R	E	Q	F	A	S	L	I	K	S	T	D	G	F	Y	E
Template Known Secondary structure			.	.	.	.	.	.	.							S		B	T	T	T			B
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		260								.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions