Job Description Q46877 Confidence 39.88% Date Thu Jan 5 12:35:29 GMT 2012 Rank 305 Aligned Residues 108 % Identity 19% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	R	S	K	.	.	.	.	G	V	L	V	G	T	S	T	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.																											.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.
Template Sequence		I	I	V	T	F	P	P	G	G	G	T	D	M	L	A	R	L	I	G	N	Y	L	T	E	S	.	L	G	Q	T	A	V	V	E	N	R	P	G	A	S	G	N	V	G	A	R	L	V	A	D	R	A	P	D	G	Y	S	L	L	M	V	N	S	S	F	A	V	N	P	G	V	F	R	N	L	P	F	D	P	K
Template Known Secondary structure					S	S		T	T	S															T	T	.	S	S	S										G	G	G									T	S		S	S	S	S							T										S	S		S	S		T	T
Template Predicted Secondary structure																											.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
																						317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.						.	.
Template Conservation																																					.	.						.	.
Template Sequence		K	D	F	A	A	V	I	N	V	A	Y	V	P	S	V	F	V	V	P	A	G	S	K	Y	K	T	L	G	E	L	M	A	A	A	K	.	.	Q	T	N	T	Q	.	.	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	N	V	S	A	K	T	H	M
Template Known Secondary structure		T	S																		T	T		S			S								T		.	.	S	S	S			.	.						S	S	T	T	S														T
Template Predicted Secondary structure																																					.	.						.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions