Job Description Q46877 Confidence 100.00% Date Thu Jan 5 12:35:29 GMT 2012 Rank 2 Aligned Residues 391 % Identity 31% Template c2q9uB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	I	V	V	K	N	N	I	H	W	V	G	Q	R	D	W	E	V	R	D	F	H	G	T	E	Y	K	T	L	R	G	S	S	Y	N	S	Y	L	I	R	E	E	K	N	V	L	I	D	T	V	D	H	K	F	S	R	E	F	V	Q	N	L	R	N	E	I	D	L	A	D	I	D	Y	I	V	I	N	H	A
Query Conservation
Alig confidence																										.	.
Template Conservation																										.	.
Template Sequence		Q	D	Q	E	M	I	P	G	V	Y	W	V	G	I	V	D	W	M	V	R	I	F	H	G	.	.	Y	H	T	D	E	G	S	S	Y	N	S	Y	F	I	D	D	E	C	P	T	V	I	D	S	V	K	Y	P	F	A	E	E	W	L	S	R	I	A	A	C	C	P	L	D	K	I	K	Y	V	V	M	N	H	A
Template Known Secondary structure								T	T									S	S					T	T	.	.				T	T											S	S	S									G	G	G												S		G	G	G							S
Template Predicted Secondary structure																										.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	D	H	A	G	A	L	T	E	L	M	A	Q	I	P	D	T	P	I	Y	C	T	A	N	A	I	D	S	I	N	G	H	H	H	H	P	E	W	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S	M	M	T	Y	L	T	G	D	A
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		E	G	D	H	A	S	S	L	K	D	H	Y	H	K	F	T	N	A	T	F	V	C	T	K	K	C	Q	E	H	L	K	I	L	Y	G	M	E	K	A	T	W	L	I	V	D	D	K	Y	T	L	K	I	G	.	K	R	T	L	K	F	I	P	V	P	L	L	H	W	P	D	S	T	F	T	Y	C	P	E	D	K
Template Known Secondary structure							T	T					G	G	G		T	T																				T	T								T	T						S	.	S									T	T	S	S	S	T	T							T	T	T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		V	L	F	S	N	D	A	F	G	Q	H	Y	C	D	E	H	L	F	N	D	E	V	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	H	G	V	V	W	R	D	N	.	P	T	Q	I	V
Query Conservation																																																																												.
Alig confidence																																																									.	.																		.
Template Conservation																																																									.	.
Template Sequence		I	L	F	S	N	D	G	F	G	Q	H	Y	A	T	S	R	R	W	A	D	E	C	D	V	S	H	V	M	H	L	F	K	E	Y	T	A	N	I	L	G	L	F	S	A	Q	M	R	K	A	L	E	V	A	S	T	.	.	V	E	I	K	Y	I	L	S	A	H	G	V	S	W	R	G	D	A	M	G	L	A	I
Template Known Secondary structure							T	T	T							S			B	G	G	G	S																	T	T	T													T	T	.	.	S			S					S	S	S		B
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		E	L	Y	L	K	W	A	A	.	D	Y	Q	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	R	S	K	G	V	L	V	G	T	S	T	M	N	N	V
Query Conservation										.
Alig confidence										.																																		.	.
Template Conservation																																												.	.
Template Sequence		A	E	Y	D	R	W	S	K	G	Q	H	C	Q	K	K	V	T	V	V	L	D	S	M	Y	G	T	T	H	R	M	A	L	A	L	L	D	G	A	R	S	T	G	.	.	C	E	T	V	L	L	E	M	T	S	S	D	I	T	K	V	A	L	H	T	Y	D	S	G	A	V	A	F	A	S	P	T	L	N	N	T
Template Known Secondary structure									T	T					S									S	S	S																T	T	.	.								G	G	G														S										T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																.																																					.	.	.
Query SS confidence																.																																					.	.	.
Query Sequence		M	M	P	K	I	A	G	L	V	E	E	M	T	G	.	L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M	S	.	.	.	L	S	L	K	A	K	W	R	P	D	Q	D	A	L	K	L	C	R	E	H	G	R	E	I	A	R
Query Conservation																.																																					.	.	.
Alig confidence																.																																					.	.	.
Template Conservation
Template Sequence		M	M	P	S	V	A	A	A	L	N	Y	V	R	G	L	T	L	I	K	G	K	P	A	F	A	F	G	A	F	G	W	S	N	R	A	V	P	D	I	V	A	E	L	R	D	G	C	K	A	D	V	Y	D	E	K	G	I	T	F	K	F	N	Y	T	E	E	L	L	E	Q	A	Y	N	A	G	V	D	L	G	K
Template Known Secondary structure																	T	T	T	T	T	S	B								S	S	S														T	S			B				S	S						S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		395	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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