Return to main results Retrieve Phyre Job Id

Job DescriptionQ46877
Confidence24.30%DateThu Jan 5 12:35:29 GMT 2012
Rank387Aligned Residues130
% Identity8%Templatec1ztyA_
PDB info PDB header:sugar binding protein, signaling proteinChain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   247..250.........260.........270.........280.........290.........300.........310.........320......
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  ADYQEDRITIFYDTMSNNTRMMADAIAQGIAETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGL
Query Conservation        

 


 
 



  

  

 

   
  
 
            
   
   
 

 




       
   
Alig confidence 

































..


















.












.









Template Conservation    
                   
  
   
   
..
 
 
   
          .   
         .  
       
Template Sequence  PSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVG. . IKAKARTPEFAVYNQAMLE. GTYDVAYTNYFHG. ADPFTYWNSG
Template Known Secondary structure  TTS





TT
TTT..




T.T

S



.SST
Template Predicted Secondary structure 











..



.





.

Template SS confidence 















































































   347..350.........360.........370.........380 .........390......... 400.........410.. .......420..
 
   327..330.........340.........350.........360.........370.........380. ........390......
Predicted Secondary structure 



















.
Query SS confidence 






















































.














Query Sequence  VEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDA. LKLCREHGREIARQW
Query Conservation 
  
       
    





 
 
   
   
   
  
         
 


.
    
 

 

  
Alig confidence 










......




















..........






.














Template Conservation             ......   
         
 

    ..........   
   
          
 
  
Template Sequence  YNSALQSGDGM. . . . . . PRFAMHYFTDKKLDGLLDSFY. . . . . . . . . . KTADKNEQLAIAHGIQKIIAENQ
Template Known Secondary structure 
GGGGSSTT
......
STTTT



TTTT..........S


T
Template Predicted Secondary structure 









......









..........




Template SS confidence 






































































   423......430... ......440.........450.... .....460.........470.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions