Job Description Q46877 Confidence 100.00% Date Thu Jan 5 12:35:29 GMT 2012 Rank 3 Aligned Residues 385 % Identity 24% Template c1vmeB_ PDB info PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution Resolution 1.80 Å

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		2	.	.	.	.	.	.			.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																																		.
Query SS confidence									.	.																																		.
Query Sequence		S	I	V	V	K	N	N	.	.	I	H	W	V	G	Q	R	D	W	E	V	R	D	F	H	G	T	E	Y	K	T	L	R	G	S	S	Y	N	S	Y	L	I	R	.	E	E	K	N	V	L	I	D	T	V	D	H	K	F	S	R	E	F	V	Q	N	L	R	N	E	I	D	L	A	D	I	D	Y	I	V	I	N
Query Conservation									.	.																																		.
Alig confidence									.	.																.																		.
Template Conservation																										.
Template Sequence		T	E	R	I	F	D	D	P	E	I	Y	V	L	R	I	D	D	D	R	I	R	Y	F	E	.	A	V	W	E	I	P	E	G	I	S	Y	N	A	Y	L	V	K	L	N	G	A	N	V	L	I	D	G	W	K	G	N	Y	A	K	E	F	I	D	A	L	S	K	I	V	D	P	K	E	I	T	H	I	I	V	N
Template Known Secondary structure							T	T	T											S					T	.	T	T				T	T												T	T										G	G	G										T	T	S		G	G	G							S
Template Predicted Secondary structure																										.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		H	A	E	E	D	H	A	G	A	L	T	E	L	M	A	Q	.	I	P	D	T	P	I	Y	C	T	A	N	A	I	D	S	I	N	G	H	H	H	H	P	E	W	N	F	N	V	V	K	T	G	D	T	L	D	I	G	N	G	K	Q	L	I	F	V	E	T	P	M	L	H	W	P	D	S	M	M	T	Y	L	T
Query Conservation																		.
Alig confidence																		.																						.	.																	.
Template Conservation																																								.	.																	.
Template Sequence		H	T	E	P	D	H	S	G	S	L	P	A	T	L	K	T	I	G	H	D	V	E	I	I	A	S	N	F	G	K	R	L	L	E	G	F	Y	G	.	.	I	K	D	V	T	V	V	K	D	G	E	E	R	E	I	G	.	G	K	K	F	K	F	V	X	T	P	W	L	H	W	P	D	T	X	V	T	Y	L	D
Template Known Secondary structure									T	T										S																				.	.									T	T						T	.	T									T	T	S	S	S	T	T							T
Template Predicted Secondary structure																																								.	.																	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		G	D	A	V	L	F	S	N	D	A	F	G	Q	H	Y	C	D	E	H	L	F	N	.	D	E	V	D	Q	T	E	L	F	E	Q	C	Q	R	Y	Y	A	N	I	L	T	P	F	S	R	L	V	T	P	K	I	T	E	I	L	G	F	N	L	P	V	D	M	I	A	T	S	H	G	V	V	W	R	D	N	P	T
Query Conservation																								.
Alig confidence		.	.																					.																																					.	.
Template Conservation		.	.																																																										.	.
Template Sequence		.	.	G	I	L	F	S	C	D	V	G	G	G	Y	L	L	P	E	I	L	D	D	S	N	E	S	V	V	E	R	Y	L	P	H	V	T	K	Y	I	V	T	V	I	G	H	Y	K	N	Y	I	L	E	G	A	E	K	L	S	S	.	.	L	K	I	K	A	L	L	P	G	H	G	L	I	W	K	K	D	P	Q
Template Known Secondary structure		.	.	T						T	T	T			S	S			S	S	S	B	S																						G	G	G												T	T	.	.	S			S					S	S	S		B	B	S	S
Template Predicted Secondary structure		.	.																																																										.	.
Template SS confidence
				162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																.																																			.
Query SS confidence																.																																			.
Query Sequence		Q	I	V	E	L	Y	L	K	W	A	A	D	Y	Q	.	E	D	R	I	T	I	F	Y	D	T	M	S	N	N	T	R	M	M	A	D	A	I	A	Q	G	I	A	E	T	D	P	R	V	A	.	V	K	I	F	N	V	A	R	S	D	K	N	E	I	L	T	N	V	F	R	S	K	G	V	L	V	G	T	S	T
Query Conservation																.																																			.
Alig confidence																.																																			.
Template Conservation
Template Sequence		R	L	L	N	H	Y	V	S	V	A	K	G	D	P	K	K	G	K	V	T	V	I	Y	D	S	X	Y	G	F	V	E	N	V	X	K	K	A	I	D	S	L	K	E	K	G	F	T	P	V	V	Y	K	F	S	D	E	E	R	P	A	I	S	E	I	L	K	D	I	P	D	S	E	A	L	I	F	G	V	S	T
Template Known Secondary structure													T				T	T									S	S	S																T	T										S	S												S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		M	N	N	V	M	M	P	K	I	A	G	L	V	E	E	M	T	G	L	R	F	R	N	K	R	A	S	A	F	G	S	H	G	W	S	G	G	A	V	D	R	L	S	T	R	L	Q	D	A	G	F	E	M	S	L	S	L	K	A	K	W	R	P	.	D	Q	D	A	L	K	L	C	R	E	H	G	R	E	I	A
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		Y	E	A	E	I	H	P	L	X	R	F	T	L	L	E	I	I	D	K	A	N	Y	E	K	P	V	L	V	F	G	V	H	G	W	A	P	S	A	E	R	T	A	G	E	L	L	K	E	T	K	F	R	I	L	S	F	T	E	I	K	G	S	N	X	D	E	R	K	I	E	E	A	I	S	L	L	K	K	E	L
Template Known Secondary structure			T	T																																		T	T	S									T	S	S											S	S	S			T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		394
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		398

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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