Job Description P0AAF1 Confidence 83.23% Date Thu Jan 5 11:12:44 GMT 2012 Rank 8 Aligned Residues 369 % Identity 11% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		A	K	S	N	K	M	G	V	V	Q	L	T	I	L	T	M	V	N	M	M	G	S	G	I	I	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	K	L	A	E	V	G	T	I	S	I	I	S	W	.	L	V	T	A	V	G	S	M	A	L	A	W	A	F	A	K	C
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		N	E	P	P	E	F	S	T	A	S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W	G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	G	L	E	P	N	S	T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F
Template Known Secondary structure		S	S			S	S											T					S																S		S	T	T			T	T																T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		63	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.
Predicted Secondary structure											.													.	.	.	.	.																																								.	.	.	.	.	.	.	.
Query SS confidence											.													.	.	.	.	.																																								.	.	.	.	.	.	.	.
Query Sequence		G	M	F	S	R	K	S	G	G	.	M	G	G	Y	A	E	Y	A	F	G	K	S	.	.	.	.	.	G	N	F	M	A	N	Y	T	Y	G	V	S	L	L	I	A	N	V	A	I	A	I	S	A	V	G	Y	G	T	E	L	L	G	A	S	L	S	P	V	.	.	.	.	.	.	.	.	Q	I	G	L	A	T
Query Conservation											.													.	.	.	.	.																																								.	.	.	.	.	.	.	.
Alig confidence											.													.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I
Template Known Secondary structure				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T	T				T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.												170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	V	L	W	I	C	T	V	A	N	F	G	G	A	R	I	T	G	Q	I	S	S	I	T	V	W	G	V	I	I	P	V	V	G	L	C	I	I	G	W	.	.	.	.	.	.	.	.	.	.	.	F	W	F	S	P	T	L	Y	V	D	S	W	N	P	H	H	A	P	F	F	S	A	V	G	S	S	I	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y
Template Known Secondary structure									S	S				T	T																																																T					S	S								T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.										.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.
Query Sequence		M	T	L	W	A	F	L	G	L	E	S	A	C	A	N	T	D	V	V	E	N	P	E	R	N	V	P	I	A	V	L	G	G	T	L	G	A	A	V	I	Y	I	V	S	T	N	V	I	A	.	.	.	.	.	.	.	.	.	G	I	V	P	N	M	E	L	A	N	S	T	A	P	F	G	L	A	F	A	Q	M
Query Conservation																																																			.	.	.	.	.	.	.	.	.
Alig confidence																							.	.																											.	.	.	.	.	.	.	.	.
Template Conservation																							.	.
Template Sequence		W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	.	.	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W
Template Known Secondary structure								T											T		S	S	.	.																																			T	T	S								G	G	G
Template Predicted Secondary structure																							.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	P	E	V	G	K	V	I	M	A	L	M	V	M	S	C	C	G	S	L	L	G	W	Q	F	T	I	A	Q	V	F	K	S	S	S	D	E	G	Y	F	P	K	I	F	S	R	V	T	K	V	D	A	P	V	Q	G	M	L	T	I	V	I	I	Q	S	G	L	A	L	M	T	I	S	P	S	L	N	S	Q
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	.	.	.	.	.	.	.	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P
Template Known Secondary structure			T	S	S	S	T	T																												T	T	S		.	.	.	.	.	.	.	S	S	S	S	S		S	S		S	T	T																				S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.								.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	V	L	V	N	L	A	V	V	T	N	I	I	P	Y	I	L	S	M	A	A	L	V	I	I	Q	K	V	A	N	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure																															T
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.