Job Description P0AAF1 Confidence 97.64% Date Thu Jan 5 11:12:44 GMT 2012 Rank 7 Aligned Residues 366 % Identity 13% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																						.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		S	Q	A	K	S	N	K	M	G	V	V	Q	L	T	I	L	T	M	V	N	M	M	G	S	G	I	I	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	K	L	A	E	V	G	T	.	I	S	I	I	S	W	L	V	T	A	V	G	S	M	A	L	A	W	A	F
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T
Template Known Secondary structure		S	T	T				S	S																																T			T	T	S		S	S														S																		T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		A	K	C	G	M	F	S	R	K	S	G	G	M	G	.	.	.	.	.	G	Y	A	E	Y	A	F	G	K	S	G	N	F	M	A	N	Y	T	Y	G	V	S	L	L	I	A	N	V	A	I	A	I	S	A	V	G	Y	G	T	E	L	L	G	A	S	L	S	P	V	Q	I	G	L	A	T	I	G	V	L	W	I
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.
Template Conservation
Template Sequence		F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F
Template Known Secondary structure		T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S																			T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	T	V	A	N	F	G	G	A	R	I	T	G	Q	I	S	S	I	T	V	W	G	V	I	I	P	V	V	G	L	C	I	I	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	W	F	S	P	T	L	Y	V	D	S	W	N	P	H	H	A	P	F	F	S	A	V	G	S	S	I	A
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y
Template Known Secondary structure		T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		M	T	L	W	A	F	L	G	L	E	S	A	C	A	N	T	D	V	V	E	N	P	E	R	N	V	P	I	A	V	L	G	G	T	L	G	A	A	V	I	Y	I	V	S	T	N	V	I	A	G	.	.	.	.	.	I	V	P	N	M	E	L	A	N	S	T	A	P	F	G	L	A	F	A	Q	M	F	T	P	E
Query Conservation																																																				.	.	.	.	.
Alig confidence																							.	.																												.	.	.	.	.
Template Conservation																							.	.
Template Sequence		W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	.	.	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P
Template Known Secondary structure							T	T												T	T	T	.	.																																				T						T	T		S										T	S	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.			.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		V	G	K	V	I	M	A	L	M	V	M	S	C	C	G	S	L	L	G	W	Q	F	T	I	A	Q	V	F	K	S	S	S	D	E	G	Y	F	P	K	I	F	S	R	V	T	K	V	D	A	P	V	Q	G	M	L	T	I	V	I	I	Q	S	G	L	A	L	M	T	I	S	P	S	L	.	.	.	N	S	Q	F
Query Conservation																																																																											.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L
Template Known Secondary structure		T																															T	T	T	T	.	.	.	.	.	.	.	.	.	.		S	S																									G	G	G
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.											.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	L	V	N	L	A	V	V	T	N	I	I	P	Y	I	L	S	M	A	A	L	V	I	I	Q	K	V	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V
Template Known Secondary structure																													T
Template Predicted Secondary structure
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.