Job Description P60472 Confidence 100.00% Date Thu Jan 5 12:06:50 GMT 2012 Rank 6 Aligned Residues 213 % Identity 41% Template c2d2rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase Resolution 1.88 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	R	H	V	A	I	I	M	D	G	N	G	R	W	A	K	K	Q	G	K	I	R	A	F	G	H	K	A	G	A	K	S	V	R	R	A	V	S	F	A	A	N	N	G	I	E	A	L	T	L	Y	A	F	S	S	E	N	W	N	R	P	A	Q	E	V	S	A	L	M	E	L	F	V	W	A	L	D	S	E	V
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	H	L	A	I	I	M	D	G	N	G	R	W	A	K	L	K	N	K	A	R	A	Y	G	H	K	K	G	V	K	T	L	K	D	I	T	I	W	C	A	N	H	K	L	E	C	L	T	L	Y	A	F	.	.	.	.	.	.	.	.	.	.	E	V	D	F	L	M	K	M	L	K	K	Y	L	K	D	E	R
Template Known Secondary structure																		T	T	T																							T	T	T		S								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.											.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	H	R	H	N	V	R	L	R	I	I	G	D	T	S	R	F	N	S	R	L	Q	E	R	I	R	K	S	E	A	L	T	A	G	N	T	G	L	T	L	N	I	A	A	N	Y	G	G	R	W	D	I	V	Q	G	V	R	Q	L	A	E	K	V	Q	Q	G	N	L	Q	P	D	Q	I	D	E	E	M	L
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		S	T	Y	L	D	N	N	I	R	F	R	A	I	G	D	L	E	G	F	S	K	E	L	R	D	T	I	L	Q	L	E	N	D	T	R	H	F	K	D	F	T	Q	V	L	A	L	N	Y	G	S	K	N	E	L	S	R	A	F	K	S	L	L	E	S	P	P	S	N	I	S	L	L	E	.	S	L	E	N	E	I
Template Known Secondary structure							T	T							S		G	G	G	S																T	T			S								S																	S			T	T	G	G	G		S	.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	H	V	C	M	H	E	L	A	P	V	D	L	V	I	R	T	G	G	E	H	R	I	S	N	F	L	L	W	Q	I	A	Y	A	E	L	Y	F	T	D	V	L	W	P	D	F	D	E	Q	D	F	E	G	A	L	N	A	F	A	N	R	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	R	L	D	T	R	N	L	P	E	V	D	L	L	L	R	T	G	G	E	M	R	L	S	N	F	L	L	W	Q	S	S	Y	A	E	L	F	F	T	P	I	L	W	P	D	F	T	P	K	D	L	E	N	I	I	S	D	F	Y	K	R	V	R
Template Known Secondary structure			T	T	S	T	T	T	T	S				S						S	S					T	T	S	S	T	T	T	T	T	T								S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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