Job Description P0A884 Confidence 100.00% Date Thu Jan 5 11:07:10 GMT 2012 Rank 12 Aligned Residues 262 % Identity 49% Template c2aazG_ PDB info PDB header:transferase Chain: G: PDB Molecule:thymidylate synthase; PDBTitle: cryptococcus neoformans thymidylate synthase complexed with2 substrate and an antifolate Resolution 2.08 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.											.
Query SS confidence																																.											.
Query Sequence		K	Q	Y	L	E	L	M	Q	K	V	L	D	E	G	T	Q	K	N	D	R	T	G	T	G	T	L	S	I	F	G	.	H	Q	M	R	F	N	L	Q	D	G	.	F	P	L	V	T	T	K	R	C	H	L	R	S	I	I	H	E	L	L	W	F	L	Q	G	D	T	N	I	A	Y	L	H	E	N	N	V	T	I
Query Conservation																																.											.
Alig confidence																																.											.
Template Conservation
Template Sequence		Y	Q	Y	L	D	L	I	R	R	I	I	N	V	G	E	V	R	P	D	R	T	G	T	G	T	V	A	L	F	A	P	P	S	F	R	F	S	L	A	D	N	T	L	P	L	L	T	T	K	R	V	F	L	R	G	V	I	A	E	L	L	W	F	V	S	G	C	T	D	A	K	M	L	S	S	Q	G	V	G	I
Template Known Secondary structure																					T	T	S	S							S									G	G	G	B						S	S																	T			B	T					T	T	T			T
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		80	.	.	.	.	.													.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.									.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		W	D	E	W	A	D	.	.	.	.	.	.	.	.	.	.	.	.	E	N	G	D	L	G	P	V	Y	G	K	Q	W	R	A	W	P	T	.	.	.	.	.	.	.	.	P	D	G	R	H	I	D	Q	I	T	T	V	L	N	Q	L	K	N	D	P	D	S	R	R	I	I	V	S	A	W	N	V	G	E	L	D
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	D	G	N	G	S	K	E	F	L	E	K	V	G	L	G	H	R	R	E	G	D	L	G	P	V	Y	G	F	Q	W	R	H	F	G	A	E	Y	T	D	A	D	G	D	Y	K	G	K	G	V	D	Q	L	Q	R	V	I	D	T	I	K	N	N	P	T	D	R	R	I	I	L	S	A	W	N	P	K	D	L	P
Template Known Secondary structure		T					S							T	T		T	T	S		T	T	B			S									B	T						T	T				T	T		S	B														T	T		S									T	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.										.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.
Query Sequence		K	M	A	L	A	P	C	H	A	F	F	Q	F	Y	V	A	.	.	.	.	.	.	.	.	.	D	G	K	L	S	C	Q	L	Y	Q	R	S	C	D	V	F	L	G	L	P	F	N	I	A	S	Y	A	L	L	V	H	M	M	A	Q	Q	C	D	L	E	V	G	D	F	V	W	T	G	G	D	T	H	L	Y	S
Query Conservation																		.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	A	L	P	P	C	H	M	F	C	Q	F	F	V	S	L	P	P	A	D	S	P	G	S	K	P	K	L	S	C	L	M	Y	Q	R	S	C	D	L	G	L	G	V	P	F	N	I	A	S	Y	A	L	L	T	H	M	I	A	L	I	T	D	T	E	P	H	E	F	I	L	Q	M	G	D	A	H	V	Y	R
Template Known Secondary structure		G	S	S	S			S													T	T		T	T	S															T	T	T																					T																	G
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		N	H	M	D	Q	T	H	L	Q	L	S	R	E	P	R	P	L	P	K	L	I	I	K	.	.	.	R	K	P	E	S	I	F	D	Y	R	F	E	D	F	E	I	E	G	Y	D	P	H	P	G	I	K	A	P	V	A
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		D	H	V	E	P	L	K	T	Q	L	E	R	E	P	R	D	F	P	K	L	K	W	A	R	S	K	E	E	I	G	D	I	D	G	F	K	V	E	D	F	V	V	E	G	Y	K	P	W	G	K	I	D	M	K	M	S
Template Known Secondary structure		G	G									T	S											S	S							S	T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions