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Job DescriptionP31434
Confidence99.09%DateThu Jan 5 11:47:24 GMT 2012
Rank29Aligned Residues194
% Identity18%Templated1ktba2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   259260.........270.........280.. .......290......... 300.........310.... .....320.
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Query Sequence  GRPALPPAWSFGLWLTTSFTTNYD. . . . . . . . . . . . EATVNSFIDGMAERNLP. . . LHVFHFDCFWMKAFQ. . WCDFEWD
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Template Sequence  GLARTPPM. . . . . GWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAAKQRDAEGRLVPD
Template Known Secondary structure  S

SS

.....STT


TTT
TTTSSSSST



SS
B
SS

TTS


B
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   4.....10. ........20.........30.........40.........50.........60.........70........
 
   322..... ..330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  PLTFPD. PEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYAD
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Template Sequence  PERFPRGIKALADYVHARGLKLGIYGDLGRLTCGG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YPGTTLDRVEQ
Template Known Secondary structure  TTT
TTTTT
BSSB
TTS..................................SB
B
GGG
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   7980.........90.........100.........110... ......120....
 
   401........410.........420.........430.........440.........450.........460....... .
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Query Sequence  KLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARS. . . . . . . . . . . . A
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Template Sequence  DAQTFAEWGVDMLKLDGC. . . . . . . . . . . . . . . . YSSGKEQAQGYPQMARALNATG. . . RPIVYSCSWPAYQGGLPPKVN
Template Known Secondary structure  T


T................T

TT...S


TTSSTTT

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   125....130.........140.. .......150.........160.... .....170.........180.....
 
   469470......... 480.........490.........500.........510
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Query Sequence  SVGAQKFPVHW. . GGDCYANYESMAESLRGGLSIGLSGFGFWSH
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Template Sequence  YTLLGEICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGP
Template Known Secondary structure 
S
S



SSTGGGTGGG
BT
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   186...190.........200.........210.........220.........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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