Job Description P31434 Confidence 99.81% Date Thu Jan 5 11:47:24 GMT 2012 Rank 16 Aligned Residues 520 % Identity 12% Template c3mi6A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11. Resolution 2.70 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	L	Q	V	F	E	V	E	Q	Q	D	N	E	M	V	V	Y	A	A	P	R	D	V	R	E	R	T	W	Q	L	D	T	P	L	F	T	L	R	F	F	S	P	Q	E	G	I	V	G	V	R	I	E	H	F	Q	G	A	L	N	N	G	P	H	Y	P	L	N	I	L	Q	D	V	K	V	T	I	E	N	T
Query Conservation
Alig confidence																																																							.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence		F	R	Q	P	A	F	Q	V	T	Q	A	N	G	S	R	I	T	E	L	T	Y	D	H	Y	Q	L	L	T	G	K	Q	R	L	A	N	L	P	S	T	F	D	D	T	D	D	D	A	Q	T	L	V	V	S	.	.	.	.	F	N	D	R	I	T	G	L	A	L	D	L	N	Y	S	I	F	P	H	Q	D	V	I
Template Known Secondary structure			S			S						T	T	S																S					S	S	S							S											.	.	.	.				T	T	T												G	G	G	T
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		98	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		E	R	Y	A	E	F	K	S	.	G	N	L	S	A	R	V	S	K	G	E	F	W	S	L	D	F	L	R	N	G	E	R	I	T	G	S	Q	V	K	N	N	G	Y	V	Q	D	T	N	N	Q	R	N	Y	M	F	E	R	L	D	L	G	V	G	E	T	V	Y	G	L	G	E	R	F	T	A	L	V	R	N	G
Query Conservation										.
Alig confidence										.																																			.	.	.	.	.	.	.	.	.												.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.												.	.
Template Sequence		V	K	S	A	K	F	T	N	P	S	S	E	K	L	V	L	N	R	A	L	S	S	Q	L	D	L	P	D	A	N	Y	D	L	I	Q	F	S	G	T	W	A	R	E	.	.	.	.	.	.	.	.	.	R	H	L	Y	R	H	P	L	R	P	G	.	.	X	Q	S	I	S	S	L	R	X	A	S	S	H	Q	Q
Template Known Secondary structure											S	S	S															S													T	T			.	.	.	.	.	.	.	.	.										S		.	.								S	S	S	S		S	S	B
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.										.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		177	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure					.																																																												.	.	.	.
Query SS confidence					.																																																												.	.	.	.
Query Sequence		Q	T	V	.	E	T	W	N	R	D	G	G	T	S	T	E	Q	A	Y	K	N	I	P	F	Y	M	T	N	R	G	Y	G	V	L	V	N	H	P	Q	C	V	S	F	E	V	G	S	E	K	V	S	K	V	Q	F	S	V	E	S	E	Y	L	E	.	.	.	.	Y	F	V	I	D	G	P	T	P	K	A	V	L
Query Conservation					.																																																												.	.	.	.
Alig confidence					.																																																												.	.	.	.
Template Conservation
Template Sequence		N	P	F	X	X	L	A	R	P	Q	T	T	D	E	Q	G	A	V	F	G	F	N	L	V	Y	S	G	N	F	L	D	A	I	E	V	D	Q	Y	S	T	S	R	I	L	T	G	I	N	P	D	E	F	G	W	N	L	A	P	Q	A	T	F	Q	T	P	E	A	I	L	S	Y	T	S	A	G	X	N	Q	L	S
Template Known Secondary structure			S							T	T			S	S	S	B								S			S	S									T	T	S										S	T	T							T	T														S	B
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.								310	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Query Sequence		D	R	Y	T	R	F	T	G	R	P	A	L	P	P	A	W	S	.	.	.	.	.	.	.	F	G	L	W	L	T	T	S	F	T	T	N	Y	D	E	A	T	V	N	S	F	I	D	G	M	A	E	R	N	L	P	L	H	V	F	H	F	D	C	F	W	.	.	.	.	.	.	.	M	K	A	F	Q	W	C	D
Query Conservation																			.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.												.	.																		.	.										.	.	.	.	.	.	.						.	.
Template Conservation																																					.	.																		.	.																						.	.
Template Sequence		Q	Q	X	A	S	F	Y	Q	Q	H	L	V	N	P	R	F	A	H	E	E	R	P	V	L	I	N	N	W	E	A	T	Y	F	D	F	.	.	N	E	A	K	L	X	T	I	V	N	Q	A	K	R	L	G	I	.	.	E	X	F	V	L	D	D	G	W	F	G	H	R	D	D	D	T	T	S	L	G	.	.	D
Template Known Secondary structure												T	S		T	T	T	T	T	S													T	T			.	.																T		.	.							T	T		B	T	T		S	S	T	T	S		T	T	.	.
Template Predicted Secondary structure																																					.	.																		.	.																						.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.
		318	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure												.																							.
Query SS confidence												.																							.
Query Sequence		F	E	W	D	P	L	T	F	P	D	.	P	E	G	M	I	R	R	L	K	A	K	G	L	K	I	C	V	W	I	N	P	Y	.	I	G	Q	K	S	P	V	F	K	E	L	Q	E	K	G	Y	L	L	K	R	P	D	G	S	L	W	Q	W	D	K	W	Q	P	G	L	A	I	Y	D	F	T	N	P	D	A	C
Query Conservation												.																							.
Alig confidence												.																							.											.	.																		.	.	.	.
Template Conservation																																														.	.																		.	.	.	.
Template Sequence		W	F	V	D	Q	R	K	F	P	D	G	I	E	H	F	S	Q	A	V	H	Q	Q	G	X	K	F	G	L	W	F	E	P	E	X	V	S	V	D	S	D	L	Y	Q	Q	.	.	H	P	D	W	L	I	H	A	P	K	S	T	P	T	P	G	R	.	.	.	.	H	Q	F	V	L	D	X	A	R	P	E	V	V
Template Known Secondary structure			S	B		T	T	T		T	T												T	T									T	T				S	S	S	S					.	.		G	G	G	B				T	T						S	S	.	.	.	.	S				B		T	T
Template Predicted Secondary structure																																														.	.																		.	.	.	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.			.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.					.	.	.	.	.	450	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		K	W	Y	A	D	K	L	K	G	L	V	.	A	M	G	V	D	C	F	K	T	D	F	G	E	R	I	P	T	D	V	Q	W	F	D	G	S	D	P	Q	K	M	H	N	H	Y	A	Y	I	Y	N	E	L	V	W	N	V	L	K	D	T	V	G	E	E	E	A	V	L	F	A	R	S	A	S	V	G	A	Q	K
Query Conservation													.
Alig confidence													.																.	.	.																																			.
Template Conservation																													.	.	.																																			.
Template Sequence		D	Y	L	F	K	L	X	S	Q	X	I	E	S	A	N	L	D	Y	I	K	W	D	X	N	R	Y	A	.	.	.	T	E	X	F	S	S	R	L	T	S	D	Q	Q	L	E	L	P	H	R	Y	I	L	G	V	Y	Q	L	Y	A	R	L	T	Q	A	.	Y	P	N	V	L	F	E	S	C	A	S	G	G	G	R
Template Known Secondary structure																T		S								S			.	.	.		S				S	S	S		G	G	G	G	G	G																				.		T	T							S	T	T	T	S	S
Template Predicted Secondary structure																													.	.	.																																			.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.				.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.		.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		475									.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence		F	.	.	.	.	.	.	.	.	P	V	H	W	G	G	D	C	Y	A	N	Y	E	S	M	A	E	S	L	R	G	G	L	S	I	G	L	S	G	F	G	F	W	S	H	D	I	G	G	F	E	N	T	A	P	A	H	V	Y	K	R	W	C	A	F	G	L	L	S	S	H	S	R	L	H	G	S	K	S	Y	R
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																																																				.													.	.	.	.	.	.
Template Conservation																																																														.													.	.	.	.	.	.
Template Sequence		F	D	L	G	X	X	Y	Y	A	P	Q	A	W	T	S	D	D	T	D	A	A	E	R	L	L	I	Q	F	G	T	S	Y	G	Y	P	Q	A	X	X	G	A	H	V	S	A	V	P	N	D	Q	X	G	R	I	T	S	L	K	T	R	.	G	A	V	A	F	F	G	D	L	G	Y	E	.	.	.	.	.	.	L
Template Known Secondary structure			S							S	S						S															T	T	T	S		G	G	G								S	S		T	T	T										.					T	S	S						.	.	.	.	.	.	S
Template Predicted Secondary structure																																																														.													.	.	.	.	.	.
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.							.
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	W	A	Y	D	D	E	S	C	D	V	V	R	F	F	T	Q	L	K	C	R	M	M	P	Y	L	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	T	K	X	A	P	T	E	L	D	Q	V	K	K	Q	V	A	F	Y	K	C	Y	R	Q	L	F	Q	F
Template Known Secondary structure			S	T	T																			T
Template Predicted Secondary structure
Template SS confidence
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.