Job Description P31434 Confidence 98.94% Date Thu Jan 5 11:47:24 GMT 2012 Rank 30 Aligned Residues 287 % Identity 16% Template c3dhuC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum Resolution 2.00 Å

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		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		D	P	E	G	M	I	R	R	L	K	A	K	G	L	K	I	C	V	W	I	N	P	.	Y	I	G	Q	K	S	P	V	F	K	E	L	Q	E	K	G	Y	L	L	K	R	P	D	G	S	L	W	Q	W	D	K	W	Q	P	G	L	A	I	Y	D	F	T	N	P	D	A	C	K	W	Y	A	D	K	L	K	G	L
Query Conservation																								.
Alig confidence																								.												.	.
Template Conservation																																				.	.
Template Sequence		D	F	K	A	L	T	D	R	A	H	E	L	G	M	K	V	M	L	D	I	V	Y	N	H	T	S	P	D	S	V	L	A	T	E	.	.	H	P	E	W	F	Y	H	D	A	D	G	Q	L	T	N	K	V	G	D	W	S	D	V	K	D	L	D	Y	G	H	H	E	L	W	Q	Y	Q	I	D	T	L	L	Y	W
Template Known Secondary structure													T	T										S				T	T	S						.	.		G	G	G	B		B		T	T	S		B			S		T	T		T	T				B		T	T		T
Template Predicted Secondary structure																																				.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	M	G	V	D	C	F	K	T	D	F	G	E	R	I	P	T	D	V	Q	W	F	D	G	S	D	P	Q	K	M	H	N	H	Y	A	Y	I	Y	N	E	L	V	W	N	V	L	K	D	T	V	G	E	E	E	A	V	L	F	A	R	S	A	S	V	G	A	Q	K	F	P	V	H	W	G	G	D	C	Y	A
Query Conservation
Alig confidence				.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation				.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		S	Q	.	F	V	D	G	Y	R	C	D	V	A	P	L	V	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	W	L	E	A	R	K	Q	V	N	A	K	Y	P	E	.	.	T	L	W	L	A	E	S	A	G	S	G	F	I	E	E	L	R	S	Q	G	Y	T	G	L	S
Template Known Secondary structure		T	T	.	T		S					T	T	G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	.	.																			T	T
Template Predicted Secondary structure				.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		162	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.																				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		486	.	.	.	490																									.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.											520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	E	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	S	L	R	G	G	L	S	I	G	L	S	G	F	G	F	W	S	H	D	I	G	G	F	E	N	T	A	.	.	.	.	.	.	.	.	.	.	P	A	H	V	Y	K	R	W	C	A	F	G
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.						.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.
Template Sequence		D	S	E	L	Y	Q	A	F	D	M	T	Y	D	Y	D	V	F	G	D	F	K	D	Y	W	Q	G	R	S	T	V	E	R	Y	V	D	L	L	Q	R	Q	D	A	T	F	P	G	N	Y	V	K	M	R	.	F	L	E	N	H	D	N	A	R	M	M	S	L	M	H	S	K	A	E	A	V	N	N	L	T	W	I
Template Known Secondary structure						T	T	T		S				G	G	G	T									T	T	S	S																S		T	T						.		S			T	T	S									S
Template Predicted Secondary structure																																																						.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		532	.	.	.	.	.	.	.														540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	S	H	S	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	S	K	S	Y	R	V	P	W	A	Y	D	D	E	S	C	D	V	V	R	F	F	T	Q	L	K	C	R	M	M	P	Y	L	Y	R	E	A	A	R	A	N	A	R	G	T	P	M	M	R	A	M	M	M	E	F	P	D	D
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Sequence		F	M	Q	R	G	I	P	L	I	Y	N	G	Q	E	F	L	A	E	H	Q	P	S	L	F	D	R	D	T	M	V	A	D	R	H	G	D	V	T	P	L	I	Q	K	L	V	T	I	K	Q	.	.	.	.	.	.	.	.	.	.	L	P	L	L	R	A	A	D	Y	Q	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S	S						T	T	G	G	G	T			S				S	S	S					T	T																		T	.	.	.	.	.	.	.	.	.	.	S	G	G	G	G		S					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.											.	.	350	.	.	.	.	.	.	.	.
		599	600	.	.	.	.	.	.	.	.	.	610						.	.	.	.	.	.	.	.	.	620	.	.	.		.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.		.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure														.	.	.	.	.														.																								.
Query SS confidence														.	.	.	.	.														.																								.
Query Sequence		P	A	C	D	Y	L	D	R	Q	Y	M	L	.	.	.	.	.	G	D	N	V	M	V	A	P	V	F	T	E	A	.	G	D	V	Q	F	Y	L	P	E	G	R	W	T	H	L	W	H	N	D	E	L	D	G	.	S	R	W	H	K	Q	Q	H	G	F	L	S	L	P	V	Y	V	R
Query Conservation														.	.	.	.	.														.																								.
Alig confidence		.	.											.	.	.	.	.														.																								.										.	.	.	.
Template Conservation		.	.																																																															.	.	.	.
Template Sequence		.	.	A	V	V	E	E	G	I	V	K	I	T	Y	R	A	A	G	E	A	L	T	A	W	I	P	L	K	G	Q	V	T	A	V	A	T	K	L	A	A	G	S	Y	Q	N	L	L	T	D	G	P	T	E	V	V	D	G	K	L	T	V	D	G	Q	.	.	.	.	P	V	L	I	K
Template Known Secondary structure		.	.				G	G	G									T	T									T	T												S						T	T	T	T							T	T						S	S	.	.	.	.
Template Predicted Secondary structure		.	.																																																															.	.	.	.
Template SS confidence
				359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420					.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions