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Job DescriptionP31434
Confidence100.00%DateThu Jan 5 11:47:24 GMT 2012
Rank5Aligned Residues728
% Identity21%Templatec2xvgA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha xylosidase; PDBTitle: crystal structure of alpha-xylosidase (gh31) from2 cellvibrio japonicus
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80....... ..90......
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Query Sequence  PLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNIL. . QDVKVTIEN
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Template Conservation            
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Template Sequence  ALAQVERTAEG. . . . VVLTLPEGTVK. . . . . . . . . KLRLQVMGERIIRVTALPGTDFGIVPESIQVVAKPATNVPFSVDQ
Template Known Secondary structure 



SS....
SSSS

.........TTSSS
GGGS


SS





SS


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   45....50..... ....60...... ...70.........80.........90.........100.........110.
 
   97..100.........110.........120.........130...... ...140.........150.........160....... ..170
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Query Sequence  TERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKN. . . . . NGYVQDTNNQRNYMFERLDLGVGETVYGLGE. RFT
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Template Conservation        
 
      
 
        
  
  
  
                                
  

 
  
 
Template Sequence  AGEKLVLKTSQVSAEVSLLDGTVSFRDAKGNVLLQEENRGTFSPVIHDPDPVDADSYALRQEFNRGSDEGFFGLGQHQNG
Template Known Secondary structure  TT
SS
TTT


TTS
B
SS


B


S
SS


TT
BB


TT




SS
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   112.......120.........130.........140.........150.........160.........170.........180.........190.
 
   171........180.........190.........200.........210.........220..
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Query Sequence  ALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGS. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QVNYAGENVELTTYN. . . . . . . LVISIPFLVSSRNYGLLWDNNSITRFGDPREAQPLNQSLKLYDAEGKEGLTVRYFVGD
Template Known Secondary structure 
SS
TTS



S.......S
SSS


S
SSSS

GGGS
SS



TT
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   192.......200...... ...210.........220.........230.........240.........250.........260....
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                     
                                            
Template Sequence  ELKLTRVEADFNHQFYKQGNELENPFPEEVAGAYKNNTLRIELEGSIEAQATGKHQFKMYNSGYAQLSLDGEVVLDRWRM
Template Known Secondary structure  SS


BSSSS
BSS


GGGT
SS
SSSS
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   266...270.........280.........290.........300.........310.........320.........330.........340.....
 
   223......230.........240.........250.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTG
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Template Conservation                                                        
  

 
   
 

 


  

 


Template Sequence  NWNPWYHNFYRELNAGDKHKLKVSWKPDGGFFHLRHLDPLPANEQHELSLASETGKAIDYYFVAGDTKDDIISGYRQLTG
Template Known Secondary structure  TTS

TT


TT





TTTTTSSSBSS
SS
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   346...350.........360.........370.........380.........390.........400.........410.........420.....
 
   260.........270.........280.........290.........300.........310.........320.........330.........
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Query Sequence  RPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKG
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Template Conservation 

 


 




 


  
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Template Sequence  KSVMLPKWAYGFWQSRERYK. . SSDEIIQNLKEYRDRKIPIDNIVLDWSYWPEDAWGSHDFDKQFFPDPKALVDKVHAMN
Template Known Secondary structure 





GGGGS

TT

..STT




S

S
TT
TTS



TTT
S
TT
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   426...430.........440..... ....450.........460.........470.........480.........490.........500...
 
   340.........350.........360.........370.........380.. .......390.........400.. .......410.......
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Query Sequence  LKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQP. GLAIYDFTNPDACKWYADKL. KGLVAMGVDCFKTDF
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Template Sequence  AQIMISVWPKFYPTTDNYKELNAKGFMFNRNLDEKNLDWIGKGYLNAFYDPFSPEATAIFWKQIRDKINVHGFDAWWLDA
Template Known Secondary structure 


S
TTSTT
TTT
B
SSTT

B


SSTGGGT



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   504.....510.........520.........530.........540.........550.........560.........570.........580...
 
   418.420....... ..430.........440.........450.........460.........470...... ...480......
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Query Sequence  GERIPTDVQW. . . . . . . . . . FDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFP. VHWGGDCYAN
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Template Sequence  VEPDIHSNLTFEKRKWLMTPNARGNGAEIFNAYAVPHAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSGDIVSR
Template Known Secondary structure  TTT
SSTT

T
SBTTB
SGGGTTTT
TTB


S


TTGGGGS

S
BS
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   584.....590.........600.........610.........620.........630.........640.........650.........660...
 
   487..490.........500.........510.........520 .........530.........540...
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Query Sequence  YESMAESLRGGLSIGLSGFGFWSHDIGGFENTAP. . . . . . . . . . . . . . . . . . . . . . . AHVYKRWCAFGLLSSHSRLHGSK
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Template Sequence  WSDMKDQIAAGIGTNLAGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQFGAFVPLYRSHGQN
Template Known Secondary structure  TTT




BT
SB

TT

SGGGS
TTSSS

SS
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   664.....670.........680.........690.........700.........710.........720.........730.........740...
 
   544..... 550.........560.........570.........580.........590.........600.........610.........620
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Query Sequence  SYRVPW. . . AYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVF
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Template Sequence  PYREIFNIADEGTEVYNAMVWYTKLRYYLMPYIYTLGGDTYHKDGTIMRGLVMDFPNDRKAWDINTQYMFGPAFLVNPVY
Template Known Secondary structure  S

SS
TTSTT


S

TT


S
TTT



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   744.....750.........760.........770.........780.........790.........800.........810.........820...
 
   621... .....630... ......640.........650.........660.........670.........680.........690........
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Query Sequence  TEAG. DVQFYLPEG. RWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVWHEGTAFHLFNLQDGHE
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Template Sequence  EYKARSRDVYLPAGSDWYNFYTGEKLAGGQTITADAPLARVPLFVKAGAIVPTGPLIQHVDEGLNSPLLITVYTGANG. .
Template Known Secondary structure  STT


TTSTTT

SS

TT


TT




SSGGGGTT


SS
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   824.....830.........840.........850.........860.........870.........880.........890.........900.
 
   699700.........710... ......720.........730.........740.........750.... .....760......
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Query Sequence  AVCEVPAADGSVIFT. . . . . . . LKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAE. . . . . SEQGLVVKPQGN
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Template Sequence  . SFDIYEDDGRSLKYQQGEWSRIPLSYDDVTGTLIIGDRVGSFTGMADERNIRVRFIAGPTADATNFDKAAAEAVTYTGK
Template Known Secondary structure  .

SSBSGGGGTBTTTT



TT

S

S

TTTT
TTTS


SS
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   902.......910.........920.........930.........940.........950.........960.........970.........980
 
   767..770.
Predicted Secondary structure 
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Query Sequence  ALTIT
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Template Conservation       
Template Sequence  SVSIK
Template Known Secondary structure 
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   981....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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