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Job DescriptionP31434
Confidence100.00%DateThu Jan 5 11:47:24 GMT 2012
Rank7Aligned Residues734
% Identity19%Templatec2x2iB_
PDB info PDB header:lyaseChain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1; PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-2 1,4-glucan lyase with acarbose
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90..
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Query Sequence  PLQVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKV. . . . . .
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Template Sequence  AGSSTPGGITDWTATMNVNFDRIDNPSI. TVQHPVQVQVTSYNNNSYRVRFN. PDGPIRDVTRGPILKQQLDWIRTQELS
Template Known Secondary structure  TTTT
TT
.TTTT
.TTSS



SSSSS
T
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   44.....50.........60.........70. ........80.........90.... .....100.........110.........120.
 
   93......100.........110.........120.........130.........140.........150........
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Query Sequence  . . . . . . TIENTERYAEFKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGV. . . . . . . .
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Template Sequence  EGCDPGMTFTSEGFLTFETKDLSVIIYGNFKTRVTRKSDGKVIMEND. . . . . . EVGTASSGNKCRGLMFVDRLYGNAIAS
Template Known Secondary structure  TT





TT

TT
TT

TTTTB
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SSS


TTT


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   122.......130.........140.........150.........160........ .170.........180.........190.....
 
   159160.........170. ........180.........190. ........200...
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Query Sequence  . . . . . . . . . . . GETVYGLGERFTA. . . . . . LVRNGQTVETWNRDGGTSTE. . . . . . . . . . . . . . . . . . QAYKNIPFYMTN
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Template Sequence  VNKNFRNDAVKQEGFYGAGEVNCKYQDTYILERTGIAMTNYNYDNLNYNQWDLRPPHHDGALNPDYYIPMYYAAPWLIVN
Template Known Secondary structure 

TTSTTT


TT


TT
S


S





GGG

GGGS
TT

S




TTS

S

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   196...200.........210.........220.........230.........240.........250.........260.........270.....
 
   204 .....210.........220... ......230.........240..... ....250.........
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Query Sequence  R. . . . . . . . GYGVLVNHPQCVSFEVGSE. . . . . KVSKVQFSVESEYLEYFVIDGP. TPKAVLDRYTRFTG. . . . . . . . . .
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Template Sequence  GCAGTSEQYSYGWFMDNVSQSYMNTGDTTWNSGQEDLAYMGAQYGPFDQHFVYGAGGGMEVVTAFSLLQGKEFENQVLNK
Template Known Secondary structure  STTSTT



S
SS

GGG


TTSS



SSSS


T

GGGT
SS
S
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   276...280.........290.........300.........310.........320.........330.........340.........350.....
 
   260.........270.........280 .........290.........300.........310.........320.....
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Query Sequence  RPALPPAWSFGLWLTTSFTTN. . . . . . . . . YDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTF. . . . .
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Template Sequence  RSVMPPKYVFGFFQGVFGTSSLLRAHMPAGENNISVEEIVEGYQNNNFPFEGLAVDVDMQDNLR. . VFTTKGEFWTANRV
Template Known Secondary structure  SS



GGGGS




SSGGG



TT


TTT




GGGSBTTB..TT


GGGBTTSS
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   357..360.........370.........380.........390.........400.........410.........420 .........430....
 
   326...330.........340.........350... ......360.........370. ........380..
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Query Sequence  . . . . . PDPEGMIRRLKAKGLKICVWINPYIGQK. . . . . SPVFKELQEKGYLLKRPD. . . . . . . . . . . . . GSLWQWDKWQP
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Template Sequence  GTGGDPNNRSVFEWAHDKGLVCQTNITCFLRNDNEGQDYEVNQTLRERQLYTKNDSLTGTDFGMTDDGPSDAYIGHLDYG
Template Known Secondary structure 

S

TTS
BTTT

S



TT


TT
B



BTT






SSS
TTS


S
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   435....440.........450.........460.........470.........480.........490.........500.........510....
 
   383......390.........400.........410.........420...
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Query Sequence  . . . . . GLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GGVECDALFPDWGRPDVAEWWGNNYKKLFSIGLDFVWQDMTVPAMMPHKIGDDINVKPDGNWPNADDPSNGQYNWKTYHP
Template Known Secondary structure  TT

B
TTSTTTTTT


STTT




BTTS
TT



TT
S
SSS

TT
B
SSSS
T
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   515....520.........530.........540.........550.........560.........570.........580.........590....
 
   424.....430.........440.........450.. .......460.........470.........480.........490.
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Query Sequence  . . . . . . . DVQWFDGSDPQKMHNHYAYIYNELVWNVL. . . . . KDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMA
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Template Sequence  QVLVTDMRYENHGREPMVTQRNIHAYTLCESTRKEGIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGDNSTTSNYIQ
Template Known Secondary structure  TB
SSSTTS
GGGSGGGTTTTTTGGG

S
S


S
TTGGGS



S
BSS
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   595....600.........610.........620.........630.........640.........650.........660.........670....
 
   492.......500.........510....... ..520.........530.........540. ........550....
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Query Sequence  ESLRGGLSIGLSGFGFWSHDIGGFEN. . . . . . . . TAPAHVYKRWCAFGLLSSHSRLHG. . . . . . . . . SKSYRVPWAYDDE
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Template Sequence  MMIANNINMNMSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLLPWFRNHYDRWIESKDHGKDYQELYMYPNE
Template Known Secondary structure  TT

S


BTT
SB


SS
TT



TTSS

B
BTTB

SBS


GGG
STT
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   675....680.........690.........700.........710.........720.........730.........740.........750....
 
   555....560.........570.........580.........590.........600.........610... ......620.... .....
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Query Sequence  SCDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDN. . . . VMVAPVFTEAG. DVQFY
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Template Sequence  . MDTLRKFVEFRYRWQEVLYTAMYQNAAFGKPIIKAASMYNNDSNVRRAQNDHFLLGGHDGYRILCAPVVWENSTERELY
Template Known Secondary structure  .T


SSGGGSTT
SSTTT

TTTS
S



SSS

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   755....760.........770.........780.........790.........800.........810.........820.........830...
 
   630. ........640 .........650.........660.........670.........680 .........690.....
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Query Sequence  LP. EGRWTHLWH. . . . . . . . NDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDY. . . . . VWHEGTAFHLFNLQD
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Template Sequence  LPVLTQWYKFGPDFDTKPLEGAMNGGDRIYNYPVPQSESPIFVREGAILPTRYTLNGENKSLNTYTDEDPLVFEVFPLGN
Template Known Secondary structure 

SSS
SGGGGSS




TT


TT


SS

TTS



GGG

TTS

S
BT
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   834.....840.........850.........860.........870.........880.........890.........900.........910...
 
   696...700........ .710.........720.........730.........740.........750.........760.........770..
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Query Sequence  GHEAVCEVPAADG. . SVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQDGSQAESEQGLVVKPQGNALTITL
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Template Sequence  N. RADGMCYLDDGGVTTNAEDNGKFSVVKVAAEQDGGTETITF. . . . . . . . TNDCYEYVFGGPFYVRVRGAQSPSNIHV
Template Known Secondary structure  T.

TTS
T


TT........SS


S
TT



S
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   914 .....920.........930.........940.........950..... ....960.........970.........980...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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