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Job DescriptionP31434
Confidence96.34%DateThu Jan 5 11:47:24 GMT 2012
Rank113Aligned Residues139
% Identity13%Templatec1ud8A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:amylase; PDBTitle: crystal structure of amyk38 with lithium ion
Resolution2.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   284.....290.........300.........310 ........ .320...... ...330.........340.....
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Query Sequence  ATVNSFIDGMAERNLPLHVFHFDCFWM. . . . . . KAFQWCDF. . . . . . . . . . EWDPLTFP. . DPEGMIRRLKAKGLKICVW
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Template Sequence  NRLHDDAAALSDAGI. . TAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGD
Template Known Secondary structure  T
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SSSTT

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   23......30....... ..40.........50.........60.........70.........80.........90.........100
 
   346...350.. .......360.........370.........380......
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Query Sequence  INPYIGQ. . . KSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANT
Template Known Secondary structure 

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STT
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B

GGGTTSS



B
GGGTTTTTT
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   101........110.........120.........130.........140.........150.........160.........170.........180
 
   387..390.........400........ .410.........420....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . YDFTNPDACKWYADKLKGLVAM. GVDCFKTDFGERIPTD
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Template Sequence  NWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFW
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   181........190.........200.........210.........220.........230.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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