Job Description P31434 Confidence 95.10% Date Thu Jan 5 11:47:24 GMT 2012 Rank 122 Aligned Residues 139 % Identity 15% Template c1mwoA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase; PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase Resolution 2.20 Å

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		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.														.							.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.
Query Sequence		A	T	V	N	S	F	I	D	G	M	A	E	R	N	L	P	L	H	V	F	H	F	D	C	F	W	M	K	A	F	Q	W	C	D	F	E	W	D	P	L	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	P	.	.	.	.	.	.	D	P	E	G	M	I	R	R	L	K	A	K	G	L	K	I	C	V
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.
Alig confidence																	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.
Template Conservation																	.	.
Template Sequence		D	H	I	R	S	K	I	P	E	W	Y	E	A	G	I	.	.	S	A	I	W	L	P	P	P	S	K	G	M	S	G	G	Y	S	M	G	Y	D	P	Y	D	Y	F	D	L	G	E	Y	Y	Q	K	G	T	V	E	T	R	F	G	S	K	E	E	L	V	R	L	I	Q	T	A	H	A	Y	G	I	K	V	I	A
Template Known Secondary structure															T		.	.									S			T	T	G	G	G			S	S	S				T	T		S	S		S		B	T	T	B	S	S		S	S																T	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		345	.	.	.		.	350	.	.	.	.	.	.	.																	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.					.	400	.	.	.
Predicted Secondary structure						.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Query SS confidence						.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Query Sequence		W	I	N	P	.	Y	I	G	Q	K	S	P	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	L	Q	E	K	G	Y	L	L	K	R	P	D	G	S	L	W	Q	W	D	K	W	Q	P	G	L	A	I	Y	D	F	T	N	P	D	A	C	K	W	Y	.	.	.	.	A	D	K	L	K
Query Conservation						.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Alig confidence						.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation
Template Sequence		D	V	V	I	N	H	R	A	G	G	D	L	E	W	N	P	F	V	G	D	Y	T	W	T	D	F	S	K	V	A	S	G	K	Y	T	A	N	Y	L	D	F	H	P	N	E	L	H	C	C	D	E	G	T	F	G	G	F	P	D	I	C	H	H	K	E	W	D	Q	Y	W	L	W	K	S	N	E	S	Y	A	A
Template Known Secondary structure						S	B										T	T	T	T								T	T		T	T		S	S				G	G	G	B	S	S	S	S	S		S			S				T	T			B	B		T	T	S								T	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	V	A	M	G	V	D	C	F	K	T	D	F	G	E	R	I	P	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	R	S	I	G	F	D	G	W	R	F	D	Y	V	K	G	Y	G	A	W
Template Known Secondary structure						T	T							T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions