Job Description P31434 Confidence 99.10% Date Thu Jan 5 11:47:24 GMT 2012 Rank 28 Aligned Residues 245 % Identity 15% Template c1ktbA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: the structure of alpha-n-acetylgalactosaminidase Resolution 1.90 Å

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		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.													.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																	.	.
Query Sequence		G	R	P	A	L	P	P	A	W	S	F	G	L	W	L	T	T	S	F	T	T	N	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	E	A	T	V	N	S	F	I	D	G	M	A	E	R	N	L	.	.	.	P	L	H	V	F	H	F	D	C	F	W	M	K	A	F	Q	.	.	W	C	D	F	E	W	D
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																	.	.
Alig confidence										.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																	.	.
Template Conservation										.	.	.	.	.
Template Sequence		G	L	A	R	T	P	P	M	.	.	.	.	.	G	W	L	A	W	E	R	F	R	C	N	V	N	C	R	E	D	P	R	Q	C	I	S	E	M	L	F	M	E	M	A	D	R	I	A	E	D	G	W	R	E	L	G	Y	K	Y	I	N	I	D	D	C	W	A	A	K	Q	R	D	A	E	G	R	L	V	P	D
Template Known Secondary structure		S			S	S				.	.	.	.	.				S					T	T				T	T	T		T	T	T	S	S	S														S	S					T								S	S		B		S	S			T	T	S				B
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		322	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		P	L	T	F	P	D	.	P	E	G	M	I	R	R	L	K	A	K	G	L	K	I	C	V	W	I	N	P	Y	I	G	Q	K	S	P	V	F	K	E	L	Q	E	K	G	Y	L	L	K	R	P	D	G	S	L	W	Q	W	D	K	W	Q	P	G	L	A	I	Y	D	F	T	N	P	D	A	C	K	W	Y	A	D
Query Conservation								.
Alig confidence								.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	R	F	P	R	G	I	K	A	L	A	D	Y	V	H	A	R	G	L	K	L	G	I	Y	G	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	L	T	C	G	G	Y	P	G	T	T	L	D	R	V	E	Q
Template Known Secondary structure		T	T	T		T	T											T	T	T									B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B		T	T	S	S	B		B		G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																																			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.					.	.	470	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		K	L	K	G	L	V	A	M	G	V	D	C	F	K	T	D	F	G	E	R	I	P	T	D	V	Q	W	F	D	G	S	D	P	Q	K	M	H	N	H	Y	A	Y	I	Y	N	E	L	V	W	N	V	L	K	D	T	V	G	E	E	E	A	V	L	F	A	R	S	.	.	.	.	A	S	V	G	A	Q	K	F	P
Query Conservation																																																																					.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	Q	T	F	A	E	W	G	V	D	M	L	K	L	D	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	S	G	K	E	Q	A	Q	G	Y	P	Q	M	A	R	A	L	N	A	T	G	R	P	I	V	Y	S	C	S	W	P	A	Y	Q	G	G	L	P	P	K	V	N
Template Known Secondary structure										T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																				T	T	S												T	T	S	S	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.																				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		477	.	.											480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.									510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		V	H	W	.	.	.	.	.	.	.	.	.	.	G	G	D	C	Y	A	N	Y	E	S	M	A	E	S	L	R	G	G	L	S	I	G	L	S	G	F	G	F	W	S	.	.	.	.	.	.	.	.	H	D	I	G	G	F	E	N	T	A	P	A	H	V	Y	K	R	W	C	A	F	G	L	L	S	S	H	S	R
Query Conservation					.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	L	L	G	E	I	C	N	L	W	R	N	Y	D	D	I	Q	D	S	W	D	S	V	L	S	I	V	D	W	F	F	T	N	Q	D	V	L	Q	P	F	A	G	P	G	H	W	N	D	P	D	M	L	I	I	G	N	F	G	L	S	Y	E	Q	S	R	S	Q	M	A	L	W	T	I	M	A	A	P	L	L
Template Known Secondary structure										S					S					S	S														T	G	G	G	T	G	G	G		B	T	T	B							B		T	T	S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	G	S	K	S	Y	R	V	P	W	A	Y	D	D	E	S	C	D	V	V	R	F	F	T	Q	L	K
Query Conservation
Alig confidence			.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		M	.	.	.	.	.	S	T	D	L	R	T	I	S	P	S	A	K	K	I	L	Q	N	R	L	M	I	Q
Template Known Secondary structure			.	.	.	.	.		S		T	T	T										T
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		266						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions