Job Description P31434 Confidence 98.37% Date Thu Jan 5 11:47:24 GMT 2012 Rank 32 Aligned Residues 280 % Identity 17% Template c1jibA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:neopullulanase; PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose. Resolution 3.30 Å

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		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.								.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.								.	.	.	390	.
Predicted Secondary structure																								.																	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence																								.																	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		D	P	E	G	M	I	R	R	L	K	A	K	G	L	K	I	C	V	W	I	N	P	.	Y	I	G	Q	K	S	P	V	F	K	E	L	Q	E	K	G	.	.	.	.	.	.	.	Y	L	L	K	R	P	D	G	S	L	W	Q	W	D	K	W	Q	P	G	L	A	I	.	.	.	.	.	.	.	Y	D	F	T	N
Query Conservation																								.																	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence																								.																	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	F	R	R	L	V	D	E	A	H	R	R	G	I	K	I	I	L	D	A	V	F	N	H	A	G	D	Q	F	F	A	F	R	D	V	L	Q	K	G	E	Q	S	R	Y	K	D	W	F	F	I	E	D	F	P	V	S	K	T	S	R	T	N	Y	E	T	F	A	V	Q	V	P	A	M	P	K	L	R	T	E	N
Template Known Secondary structure												T	T	T										S	B			T	T	S										G	G	G		T	T	G	G	G	S		B		S	S	S				S	S	S		S	B		B	S	S	S	S		T	T		B	B			T	T	S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	A	C	K	W	Y	A	D	K	L	K	G	L	V	A	M	G	V	D	C	F	K	T	D	F	G	E	R	I	P	T	D	V	Q	W	F	D	G	S	D	P	Q	K	M	H	N	H	Y	A	Y	I	Y	N	E	L	V	W	N	V	L	K	D	T	V	G	E	E	E	A	V	L	F	A	R	S	A	S	V	G
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		P	E	V	K	E	Y	L	F	D	V	A	R	F	W	M	E	Q	G	I	D	G	W	R	L	N	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	V	D	H	A	F	W	R	E	F	R	R	L	V	K	S	L	N	P	D	.	.	.	A	L	I	V	G	E	I	W	H	D
Template Known Secondary structure																	T	T	T							T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	S																	T	T	.	.	.								S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.																				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	K	F	P	V	H	W	G	G	D	C	Y	A	N	Y	E	S	M	A	E	S	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	G	W	L	M	G	D	Q	F	D	S	V	M	N	Y	L	F	R	E	S	V	I	R	F	F	A	T	G	E	I	H	A	E	R	F	D	A	E	L	T	R	A	R	M	L	Y	P	E	Q	A	A	Q	G	L	W	N	L	L	D	S	H	D	T	E	R	F	L	T	S	C	G	G	N	E	A	K	F	R	L
Template Known Secondary structure			T	T	T	T	T	T	T	S		S			B													T	S			S														T	T	S						T	T					S			T	T	S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
			496	.	.	.	500	.	.	.	.	.	.	.	.			.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.						.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure		.														.	.																																													.	.	.	.	.
Query SS confidence		.														.	.																																													.	.	.	.	.
Query Sequence		.	G	G	L	S	I	G	L	S	G	F	G	F	W	.	.	S	H	D	I	G	G	F	E	N	T	A	P	A	H	V	Y	K	R	W	C	A	F	G	L	L	S	S	H	S	R	L	H	G	S	K	S	Y	R	V	P	W	A	Y	D	.	.	.	.	.	D	E	S	C	D	V	V	R	F	F	T	Q	L	K	C
Query Conservation		.														.	.																																													.	.	.	.	.
Alig confidence		.														.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	L	F	Q	M	T	Y	L	G	T	P	L	I	Y	Y	G	D	E	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	G	A	T	D	P	D	C	R	R	P	M	I	W	E	E	K	E	Q	N	R	G	L	F	E	F	Y	K	E	L	I	R	L	R	H
Template Known Secondary structure							T	T	S	S	S						T	T	G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	T	T	T	T								G	G	G	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.																								460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.		.	.	.	.	.	630	.				.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure																																																											.								.	.	.
Query SS confidence																																																											.								.	.	.
Query Sequence		R	M	M	P	Y	L	Y	R	E	A	A	R	A	N	A	R	G	T	P	M	M	R	A	M	M	M	E	F	P	D	D	P	A	C	D	Y	L	D	R	Q	Y	M	L	G	D	N	V	M	V	A	P	V	F	T	E	A	G	.	D	V	Q	F	Y	L	P	.	.	.	E	G	R	W	T	H	L	W	H	N	D	E
Query Conservation																																																											.								.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.								.	.																					.	.	.															.								.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.								.	.																					.	.	.
Template Sequence		R	L	.	.	.	.	.	.	.	.	.	A	S	L	T	R	G	N	.	.	V	R	S	W	H	A	D	K	Q	A	N	L	Y	A	F	V	R	T	V	Q	.	.	.	D	Q	H	V	G	V	V	L	N	N	R	G	E	K	Q	T	V	L	L	Q	V	P	E	S	G	G	K	T	W	L	D	C	L	T	G	E	E
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	T							.	.								T	T	T	T									T	.	.	.	T										S	S	S										T	T	S		S					T	T	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.								.	.																					.	.	.
Template SS confidence
		496	.										.	.	500	.	.	.	.			.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.				.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		644	.	.		.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		L	D	G	.	S	R	W	H	K	Q	Q	H	G	F	L	S	L	P	V	Y	V	R	D
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		V	H	G	K	Q	G	Q	L	K	L	T	L	R	P	Y	Q	G	M	I	L	W	N	G
Template Known Secondary structure						T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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