Job Description P31434 Confidence 98.07% Date Thu Jan 5 11:47:24 GMT 2012 Rank 35 Aligned Residues 334 % Identity 12% Template c1bagA_ PDB info PDB header:alpha-amylase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose Resolution 2.50 Å

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		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		A	T	V	N	S	F	I	D	G	M	A	E	R	N	L	P	L	H	V	F	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	C	F	W	M	K	A	F	Q	W	C	D	F	E	W	D	P	L	T	F	P	.	.	.	D	P	E	G	M	I	R	R	L	K	A	K	G	L	K	I	C	V	W
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence																	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																	.	.
Template Sequence		N	T	L	K	H	N	M	K	D	I	H	D	A	G	Y	.	.	T	A	I	Q	T	S	P	I	N	Q	V	K	E	G	N	Q	G	D	K	S	M	S	N	W	Y	W	L	Y	Q	P	T	S	Y	Q	I	G	N	R	Y	L	G	T	E	Q	E	F	K	E	M	C	A	A	A	E	E	Y	G	I	K	V	I	V	D
Template Known Secondary structure							T							T	T		.	.	S					S								T	G	G	G				G	G	G	G	G	G	G	G										T	T	T															T	T	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		346	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.								.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure					.																												.	.	.	.	.	.	.
Query SS confidence					.																												.	.	.	.	.	.	.
Query Sequence		I	N	P	.	Y	I	G	Q	K	S	P	V	F	K	E	L	Q	E	K	G	Y	L	L	K	R	P	D	G	S	L	W	.	.	.	.	.	.	.	Q	W	D	K	W	Q	P	G	L	A	I	Y	D	F	T	N	P	D	A	C	K	W	Y	A	D	K	L	K	G	L	V	A	M	G	V	D	C	F	K	T	D	F
Query Conservation					.																												.	.	.	.	.	.	.
Alig confidence					.																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	I	N	H	T	T	F	D	Y	A	A	I	S	N	E	V	K	S	I	P	N	W	T	H	G	N	T	Q	I	K	N	W	S	D	R	W	D	V	T	Q	N	S	L	L	G	L	Y	D	W	N	T	Q	N	T	Q	V	Q	S	Y	L	K	R	F	L	E	R	A	L	N	D	G	A	D	G	F	R	F	D	A
Template Known Secondary structure					S	B			S		G	G	G	S						T	S	T	T							B				T	T								S	B	S	T	T						T	T																			T							T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	R	I	P	T	D	V	Q	W	F	D	G	S	D	P	Q	K	M	H	N	H	Y	A	Y	I	Y	N	E	L	V	W	N	V	L	K	D	T	V	G	E	E	E	A	V	L	F	A	R	S	A	S	V	G	A	Q	K	F	P	V	H	W	G	G	D	C	Y	A	N	Y	E	S	M	A	E	S	L	R	G	G
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	H	I	E	L	P	D	D	G	S	Y	G	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	W	P	N	I	T	N	T	S	A	E	F	Q	Y	G	Q	I	L	Q	D	S	A	S	R	D	A	A	Y	A	N	Y	M	D	V	T	A	S	N	Y	G	H	S	I	R	S	A
Template Known Secondary structure		G	G	G	S			T	T	S	G	G	G			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T		S	S		S									S	T	T	S						T	T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.																				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.																						.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.												.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	I	G	L	S	G	F	G	F	W	S	H	D	I	G	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	T	A	P	A	H	V	Y	K	R	W	C	A	F	G	L	L	S	S	.	.	.	.	.	.	.	.	.	.	.	H	S	R	L	H	G	S	K	S	Y
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	N	R	N	L	G	V	S	N	I	S	H	Y	A	S	D	V	S	A	D	K	L	V	T	W	V	E	S	H	D	T	Y	A	N	D	D	E	E	S	T	W	M	S	D	D	D	I	R	L	G	W	A	V	I	A	S	R	S	G	S	T	P	L	F	F	S	R	P	E	G	G	G	N	G	V	R	F	P	G
Template Known Secondary structure					T				T	T	T	T	T	S		S	S	S	S		G	G	G					S								S	T	T		T	T	T	T														T	T	S	S	S										T	T		B	T	T	B	S			S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		R	V	P	W	A	Y	D	D	E	S	C	D	V	V	R	F	F	T	Q	L	K	C	R	M	M	P	Y	L	Y	R	E	A	A	R	A	N	A	R	G	T	P	M	M	R	A	M	M	M	E	F	P	D	D	P	A	C	D	Y	L	D	R	Q	Y	M	L	G	D	N	V	M	V	A	P	V	F	T	E	A	G	.
Query Conservation																																																																																	.
Alig confidence																							.	.	.	.	.	.	.	.	.														.	.	.	.															.	.	.	.															.
Template Conservation																							.	.	.	.	.	.	.	.	.														.	.	.	.															.	.	.	.
Template Sequence		K	S	Q	I	G	D	R	G	S	A	L	F	E	D	Q	A	I	T	A	V	N	.	.	.	.	.	.	.	.	.	R	F	H	N	V	M	A	G	Q	P	E	E	L	.	.	.	.	S	N	P	N	G	N	N	Q	I	F	M	N	Q	R	.	.	.	.	G	S	H	G	V	V	L	A	N	A	G	S	S	S	V
Template Known Secondary structure		S	S		T	B	S				G	G	G	G									.	.	.	.	.	.	.	.	.						T	T	T						.	.	.	.			G	G	G		T	T							.	.	.	.	T	T	T								S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.														.	.	.	.															.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.										340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.					.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
				625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.		.	.	.	650	.	.	.	.	.
Predicted Secondary structure		.	.																							.
Query SS confidence		.	.																							.
Query Sequence		.	.	D	V	Q	F	Y	L	P	E	G	R	W	T	H	L	W	H	N	D	E	L	D	G	.	S	R	W	H	K	Q	Q	H	G
Query Conservation		.	.																							.
Alig confidence		.	.																							.
Template Conservation
Template Sequence		S	I	N	T	A	T	K	L	P	D	G	R	Y	D	N	K	A	G	A	G	S	F	Q	V	N	D	G	K	L	T	G	T	I	N
Template Known Secondary structure								S	S		S						S	S	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions