Job Description P0AFL6 Confidence 93.07% Date Thu Jan 5 11:26:41 GMT 2012 Rank 75 Aligned Residues 98 % Identity 11% Template c3hc1A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized hdod domain protein; PDBTitle: crystal structure of hdod domain protein with unknown function2 (np_953345.1) from geobacter sulfurreducens at 1.90 a resolution Resolution 1.90 Å

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		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.													.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	Q	A	R	R	V	L	D	T	T	M	Q	M	Y	E	Q	W	R	E	Q	Q	P	K	L	A	H	P	Q	L	E	A	L	L	R	W	A	A	M	L	H	E	V	G	L	N	I	N	H	S	G	L	H	R	H	S	A	Y	I	L	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	S	D	L	P	G	F
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.
Template Sequence		W	A	H	S	L	G	V	A	R	I	A	K	L	I	A	E	R	T	.	.	.	.	.	.	.	.	G	F	L	N	P	V	N	V	Y	V	A	G	L	L	H	D	V	G	E	V	F	I	N	F	F	R	G	K	E	F	S	Q	V	V	T	L	V	D	E	E	K	I	T	F	G	Q	A	E	E	R	L	F	G	T
Template Known Secondary structure																			T	.	.	.	.	.	.	.	.	T		S											T	T	T										S																											S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.									.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		398	.	400	.	.	.	.												.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Q	E	Q	Q	L	M	.	.	.	.	.	.	.	.	.	.	.	M	A	T	L	V	R	Y	H	R	K	A	I	K	L	D	D	L	P	R	F	T	L	F	K	K	K	Q	F	L	P	L	I	Q	L	L	R	L	G	V	L	L
Query Conservation									.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		S	H	C	E	V	G	F	A	L	A	K	R	W	S	L	N	E	F	I	C	D	T	I	L	Y	H	H	D	I	E	A	V	P	Y	K	Q	A	.	.	.	.	.	.	.	.	.	.	A	I	V	A	X	V	A	F	A	D	E	Y
Template Known Secondary structure														T	T												T	T		G	G	G		S	S	S			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.											.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions