 |
Job Description | P0AFL6 | Confidence | 94.71% | Date | Thu Jan 5 11:26:41 GMT 2012 |
Rank | 62 | Aligned Residues | 83 |
% Identity | 11% | Template | c3g25B_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:glycerol kinase; |
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
|
Resolution | 1.90 Å |
|
 |
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
. | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
Query Sequence |   |
P | R | P | Q | E | F | A | A | V | D | L | G | S | N | S | F | H | M | V | I | A | R | V | V | D | G | A | M | Q | I | I | G | R | L | K | Q | R | V | H | L | A | D | G | L | G | P | D | N | M | L | S | E | E | A | M | T | R | G | L | N | C | L | S | L | F | A | E | R | L | Q | G | F | S | P | . |
. |
A | S | V | C |
Query Conservation |   |
  |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
|   |   |   |   |   |   |
|   |
|
|   |
|   |
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
| . | . |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|   |
| . |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |
|   |   |
|
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
A | X | E | K | Y | I | L | S | I | D | Q | G | T | T | S | S | R | A | I | L | F | N | . |
Q | K | G | E | I | A | G | V | A | Q | R | E | F | K | Q | Y | F | P | Q | S | . |
. |
. |
. |
G | W | V | E | H | D | A | N | E | I | W | T | S | V | L | A | V | X | T | E | V | I | N | E | N | D | V | R | A | D | Q | I | A |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |
| . | T | T | S |
|  |  |  |  |  |  |  |  |
|
|
| B |
|
| S | T | . | . | . | . | T |
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|
| G | G | G |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
0 | . | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | |
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
|
|
|
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
  |
  |   |
86 | . | . | . | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | V | G | T | H | T | L | R | Q | A |
Query Conservation |   |
  |
|
|
|
|
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |   |   |   |   |
Template Sequence |   |
G | I | G | I | T | N | Q | R | E | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| S | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
75 | . | . | . | . | 80 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|