Job Description P0AFL6 Confidence 68.64% Date Thu Jan 5 11:26:41 GMT 2012 Rank 128 Aligned Residues 205 % Identity 14% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		S	P	R	P	Q	E	F	A	A	V	D	L	G	S	N	S	F	H	M	V	I	A	R	V	V	D	G	A	M	Q	I	I	G	R	L	K	Q	R	V	H	L	A	D	G	L	G	P	D	N	M	L	S	E	E	A	M	T	R	G	L	N	C	L	S	L	F	A	E	R	L	Q	G	F	S	P	A	.	S	V	C
Query Conservation																																																																														.
Alig confidence																												.	.	.																.	.	.	.	.	.	.	.																									.
Template Conservation																												.	.	.																.	.	.	.	.	.	.	.
Template Sequence		N	N	L	G	W	Q	F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	L	G	G	.	.	.	E	V	L	I	D	T	K	I	D	I	H	E	I	D	Q	.	.	.	.	.	.	.	.	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I
Template Known Secondary structure				T	T										T	T									T	T	S	.	.	.														B		.	.	.	.	.	.	.	.																		T	T	T	T
Template Predicted Secondary structure																												.	.	.																.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120									.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.													.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	G	T	H	T	L	R	Q	A	L	N	A	.	.	.	.	.	.	.	.	.	.	.	.	T	D	F	L	K	R	A	E	K	V	I	P	Y	P	I	E	I	I	S	G	N	E	E	A	R	L	I	F	M	G	V	E	H	T	Q	P	E	K	G	R	K	L	V	I	D	I	G	G	G	S	T	E	L	V	I
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																																								.										.
Template Conservation																																																																		.										.
Template Sequence		A	I	T	L	P	G	L	V	N	S	E	Q	G	I	V	L	Q	M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	F	V	A	N	D	T	R	A	W	A	L	A	E	K	L	F	G	H	S	Q	D	V	D	N	.	S	V	L	I	S	I	H	H	G	.	L	G	A	G	I
Template Known Secondary structure						S	S				T	T	T	T						S	S	S	B		S	S	B												S																			S	T	T	T	T		S	S	.							S	S	S	.
Template Predicted Secondary structure																																																																		.										.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.		.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																																																							.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	N	F	E	P	I	L	V	E	S	R	R	M	G	C	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	A	Q	L	Y	F	P	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	L	G	H	I	Q	I	D	P	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	A	A	A	D	G
Template Known Secondary structure				T	T					T	T	T	T		T	T	B		T	T	S	B			T	T			B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	I	N	K	E	N	F	Q	R	A	R	M	A	A	A	Q	K	L	E	T	L	T	W	Q	F	R	I	Q	G	W	N	V	A	M	G	A	S	G	T	I	K	A	A	H	E	V	L
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		D	P	L	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	V	I	N	L	F	.	.	.	N	P	E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y
Template Known Secondary structure																												.	.	.			S						S	G	G	G	G	G
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions