 |
Job Description | P38104 | Confidence | 87.25% | Date | Thu Jan 5 11:57:58 GMT 2012 |
Rank | 238 | Aligned Residues | 110 |
% Identity | 11% | Template | d1wv2a_ |
SCOP info | TIM beta/alpha-barrel
| ThiG-like
| ThiG-like
|
Resolution | 2.90 |
|
 |
  |   |
192 | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | |
. | . | . | 240 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  | . |  |  |
|
|
|
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | P | K | L | F | D | A | V | R | N | K | F | G | F | N | E | H | L | L | H | D | M | H | H | R | L | T | P | I | E | A | A | R | F | G | K | S | I | E | D | Y | R | M | F | W | . |
M | E | D | P | T | P | A | . |
. |
. |
. |
. |
. |
E | N | Q | E | C | F | R | L | I | R | Q | H | T | V | T | P | I | A | V | G | E |
Query Conservation |   |
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   | . |
|
|
|
|   |   |   | . | . | . | . | . | . |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |
|   |   |
|   |   |   |
|   |
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
Template Sequence |   |
V | V | E | T | L | K | A | A | E | Q | L | V | K | D | G | F | D | V | M | V | Y | T | S | D | D | . |
. |
. |
. |
. |
. |
P | I | I | A | R | Q | L | A | E | I | G | C | I | A | V | M | P | L | A | G | L | I | G | S | G | L | G | I | C | N | P | Y | N | L | R | I | I | L | E | E | A | K | V | P | V | L | V | D | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |
| S |
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | S |
|
| S |  |  |  |  |
| S | S | S | T | T |
|
|
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |
| S | S |
| B |  |  |  | S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1121 | . | . | . | . | . | . | . | . | 1130 | . | . | . | . | . | . | . | . | . | 1140 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 1150 | . | . | . | . | . | . | . | . | . | 1160 | . | . | . | . | . | . | . | . | . | 1170 | . | . | . | . | . | . | . | . | . | 1180 | . | . | . | . | . | . | . | . | . | 1190 | . | . | . | . |
  |
  |   |
265 | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | F | N | S | I | W | D | C | K | Q | L | I | E | E | Q | L | I | D | Y | I | R | T | T | L | T | H | A | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
G | I | T | G | M | R | R | I | A | D | F | A | S | L | Y | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |
| . | . | . | . | . | . | . | . | . |
|
|
|   |   |   |   |
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
| . |
|   |
|
|   |
|   |
|
|
|   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
G | V | G | T | A | S | D | A | A | I | A | M | E | L | G | . |
C | E | A | V | L | M | N | T | A | I | A | H | A | K | D | P | V | M | M | A | E | A | M | K | H | A | I | V | A | G | R | L | A | Y | L | A | G |
Template Known Secondary structure |   |
|
|
| S |  |  |  |  |  |  |  |  |  |  | T | . |
| S |  |  |  |  | S |  |  |  |  | T | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1195 | . | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | |
1210 | . | . | . | . | . | . | . | . | . | 1220 | . | . | . | . | . | . | . | . | . | 1230 | . | . | . | . | . | . | . | . | . | 1240 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|